MPD: Measures involving histopathology

Measures involving histopathology

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Berndt4:1	Berndt4	histopathology	(none)	lung adenoma frequency [%] adenoma_freq 48301	inbred	28	both	90wks	N=10	2011

Berndt4:2	Berndt4	histopathology	(none)	lung adenoma severity score [score] adenoma_score 48302	inbred	28	both	90wks	N=10	2011

Crusio1:48	Crusio1	histopathology	(none)	total hippocampus size (arbitrary units) hippocampus 62048 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:50	Crusio1	histopathology	(none)	size of intra- and infrapyramidal mossy fibers (arbitrary units) iipmf 62050 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:52	Crusio1	histopathology	(none)	percentage of hippocampus that is Intra- and infrapyramidal mossy fibers [%] iipmf_pct 62052 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:55	Crusio1	histopathology	(none)	size of hilus (arbitrary units) hilus 62055 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:57	Crusio1	histopathology	(none)	percentage of hippocampus that is hilus [%] hilus_pct 62057 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:60	Crusio1	histopathology	(none)	size of suprapyramidal mossy fibers (arbitrary units) supra 62060 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:62	Crusio1	histopathology	(none)	percentage of hippocampus that is suprapyramidal mossy fibers [%] supra_pct 62062 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:65	Crusio1	histopathology	(none)	size of stratum pyramidale (arbitrary units) pyr 62065 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:67	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum pyramidale [%] pyr_pct 62067 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:70	Crusio1	histopathology	(none)	size of stratum oriens (arbitrary units) oriens 62070 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:72	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum oriens [%] oriens_pct 62072 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:75	Crusio1	histopathology	(none)	size of stratum radiatum (arbitrary units) rad 62075 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:77	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum radiatum [%] rad_pct 62077 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:80	Crusio1	histopathology	(none)	size of stratum lacunosum-moleculare (arbitrary units) lacun 62080 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:82	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum lacunosum-moleculare [%] lacun_pct 62082 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

DiCurzio1:6	DiCurzio1	histopathology	(none)	adrenal total width, diameter [µm] adr_width 36606	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:7	DiCurzio1	histopathology	(none)	adrenal medulla width [µm] adr_medul_width 36607	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:8	DiCurzio1	histopathology	(none)	adrenal cortex zona glomerulosa thickness [µm] adr_glome_width 36608	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:9	DiCurzio1	histopathology	(none)	adrenal cortex zona intermedia thickness [µm] adr_inter_width 36609	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:10	DiCurzio1	histopathology	(none)	adrenal cortex zona fasciculata thickness [µm] adr_fasci_width 36610	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:11	DiCurzio1	histopathology	(none)	adrenal cortex zona reticularis thickness [µm] adr_retic_width 36611	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:12	DiCurzio1	histopathology	(none)	adrenal cortex X-zone thickness [µm] adr_Xzone_width 36612	BXD w/par	66	both	7-10wks*	N=3	2010

DiCurzio1:14	DiCurzio1	histopathology	(none)	adrenal glands, presence of X-zone (0=no; 1=yes) [score] Xzone_presence 36614	BXD w/par	66	both	7-10wks*	N=4	2010

DiCurzio1:15	DiCurzio1	histopathology	(none)	adrenal glands, presence of lipoid structures in females (0=none; 1=outside X-zone; 2=within X-zone) [score] lipoid_presence 36615	BXD w/par	66	f	7-10wks*	N=4	2010

Dorward1:1	Dorward1	histopathology	(none)	presence of ovarian granulosa cell tumor (0=normal 1=tumor) [designation] GC-tumor 16301	QTL population		f	8wks	N=162	2005

Farmer1:1	Farmer1	histopathology	(none)	severity of lesions in cecum [score] CecumSeverity 11301	QTL population		both	6wks	N=206	2001

Farmer1:2	Farmer1	histopathology	(none)	hyperplasia of cecum [score] CecumHyperplasia 11302	QTL population		both	6wks	N=206	2001

Farmer1:3	Farmer1	histopathology	(none)	ulceration in cecum [score] CecumUlceration 11303	QTL population		both	6wks	N=206	2001

Farmer1:4	Farmer1	histopathology	(none)	percentage of cecum damaged area [%] CecumDA 11304	QTL population		both	6wks	N=206	2001

Farmer1:5	Farmer1	histopathology	(none)	sum of cecum severity, hyperplasia, ulceration and damaged area scores [score] CecumTotalScore 11305	QTL population		both	6wks	N=206	2001

Farmer1:6	Farmer1	histopathology	(none)	percentage of proximal colon damaged area [%] ProxDA 11306	QTL population		both	6wks	N=206	2001

Farmer1:7	Farmer1	histopathology	(none)	severity of lesions in proximal colon [score] ProxSeverity 11307	QTL population		both	6wks	N=206	2001

Farmer1:8	Farmer1	histopathology	(none)	hyperplasia of proximal colon [score] ProxHyperplasia 11308	QTL population		both	6wks	N=206	2001

Farmer1:9	Farmer1	histopathology	(none)	ulceration in proximal colon [score] ProxUlceration 11309	QTL population		both	6wks	N=206	2001

Farmer1:10	Farmer1	histopathology	(none)	percentage of damaged area in mid colon [%] MidDA 11310	QTL population		both	6wks	N=206	2001

Farmer1:11	Farmer1	histopathology	(none)	severity of lesions in mid colon [score] MidSeverity 11311	QTL population		both	6wks	N=206	2001

Farmer1:12	Farmer1	histopathology	(none)	hyperplasia of mid colon [score] MidHyperplasia 11312	QTL population		both	6wks	N=206	2001

Farmer1:13	Farmer1	histopathology	(none)	ulcers and crypts frequency score [score] MidUlceration 11313	QTL population		both	6wks	N=206	2001

Farmer1:14	Farmer1	histopathology	(none)	percentage of damaged area in distal colon [%] DistalDA 11314	QTL population		both	6wks	N=206	2001

Farmer1:15	Farmer1	histopathology	(none)	severity of lesions in distal colon [score] DistalSeverity 11315	QTL population		both	6wks	N=206	2001

Farmer1:16	Farmer1	histopathology	(none)	hyperplasia of distal colon [score] DistalHyperplasia 11316	QTL population		both	6wks	N=206	2001

Farmer1:17	Farmer1	histopathology	(none)	ulceration in distal colon [score] DistalUlceration 11317	QTL population		both	6wks	N=206	2001

Farmer1:18	Farmer1	histopathology	(none)	proximal colon score [score] ProximalColon 11318	QTL population		both	6wks	N=206	2001

Farmer1:19	Farmer1	histopathology	(none)	middle colon score [score] MiddleColon 11319	QTL population		both	6wks	N=206	2001

Farmer1:20	Farmer1	histopathology	(none)	distal colon score [score] DistalColon 11320	QTL population		both	6wks	N=206	2001

Farmer1:21	Farmer1	histopathology	(none)	total score [score] ColonTotalScore 11321	QTL population		both	6wks	N=206	2001

Ferris1:7	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced airway inflammation, day 4 post-infection (score 0-3) [score] airway_inflam 47607	CC pre w/par	161	f	8-16wks	N=1	2012

Ferris1:8	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced airway neutrophils, day 4 post-infection (score 0-3) [score] airway_neut 47608	CC pre w/par	140	f	8-16wks	N=1	2012

Ferris1:9	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced airway damage, day 4 post-infection (score 0-3) [score] airway_damage 47609	CC pre w/par	160	f	8-16wks	N=1	2012

Ferris1:10	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced vascular inflammation (lung), day 4 post-infection (score 0-3) [score] vascular_inflam 47610	CC pre w/par	161	f	8-16wks	N=1	2012

Ferris1:11	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced alveolar inflammation, day 4 post-infection (score 0-3) [score] alveolar_inflam 47611	CC pre w/par	161	f	8-16wks	N=1	2012

Ferris1:12	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced alveolar damage, day 4 post-infection (score 0-3) [score] alveolar_damage 47612	CC pre w/par	161	f	8-16wks	N=1	2012

Ferris1:13	Ferris1	histopathology	influenza A (H1N1) virus	virus-induced pulmonary edema, day 4 post-infection (score 0-3) [score] pulmonary_edema 47613	CC pre w/par	138	f	8-16wks	N=1	2012

Graubert1:16	Graubert1	histopathology	ENU	lung adenoma frequency rate [score] adenoma_lung 11616 control ENU	inbred	20	both	13-68wks	N=6	2006

Graubert1:17	Graubert1	histopathology	ENU	lung carcinoma frequency rate [score] carcinoma_lung 11617 control ENU	inbred	20	both	13-68wks	N=6	2006

Graubert1:18	Graubert1	histopathology	ENU	lymphoid tumor frequency rate [score] lymphoid_tumor 11618 control ENU	inbred	20	both	13-68wks	N=6	2006

Graubert1:19	Graubert1	histopathology	ENU	myeloid tumor frequency rate [score] myeloid_tumor 11619 control ENU	inbred	20	both	13-68wks	N=6	2006

Graubert1:20	Graubert1	histopathology	ENU	gastrointestinal (GI) tumor frequency rate [score] GI_tumor 11620 control ENU	inbred	20	both	13-68wks	N=6	2006

Guay-Woodford1:4	Guay-Woodford1	histopathology	(none)	renal cystic disease severity [score] severity 10704	QTL population		f	2wks	N=144	2000

Harrill1:41	Harrill1	histopathology	isoniazid	lymphohistiocytic, portal, multifocal infiltrate [score] lymphohistio_portal 39541 control isoniazid	inbred	34	f	8-10wks	N=4	2011

Harrill1:46	Harrill1	histopathology	isoniazid	hepatocytic cytoplasmic, microvesiculation, multifocal [score] microvesic_multi 39546 control isoniazid	inbred	34	f	8-10wks	N=4	2011

Harrill1:51	Harrill1	histopathology	isoniazid	hepatocytic cytoplasmic, microvesiculation, diffuse [score] microvesic_dif 39551 control isoniazid	inbred	34	f	8-10wks	N=4	2011

Harrill1:56	Harrill1	histopathology	isoniazid	hepatocytic hypertrophy, panlobular, diffuse [score] hypertro_pan 39556 control isoniazid	inbred	34	f	8-10wks	N=4	2011

Haston1:2	Haston1	histopathology	radiation	percentage of lung surface covered by fibrotic scar [%] fibrosis 48802	inbred	26	both	15-36wks	N=6	2012

Haston1:6	Haston1	histopathology	radiation	average number of mast cells per mm² of lung tissue [n] mast_cells 48806	inbred	25	both	15-36wks	N=6	2012

Haston1:7	Haston1	histopathology	radiation	inflammation index (0=no alveolitis, 6=severe alveolitis) [score] alveolitis 48807	inbred	26	both	15-36wks	N=6	2012

Hillebrands1:1	Hillebrands1	histopathology	(none)	number of perivascular immune cell clusters per renal cross-section [n] clusternum 51101	inbred	23	both	90wks	N=7	2014

Hillebrands1:2	Hillebrands1	histopathology	(none)	relative size of perivascular immune cell clusters [%] clustersize 51102	inbred	20	both	90wks	N=7	2014

HMDPpheno11:1	HMDPpheno11	histopathology	high-fat high-cholesterol diet	aortic lesion size (area) [µm²] aortic_lesion 110077	HMDP hAPOE and hCETP transgenic	103	both	23-25wks	N=5	2015

Hunter1:4	Hunter1	histopathology	(none)	mammary tumor latency, days after birth [d] tum_lat 6004	MMTV PyVT transgenic	28	f		N=18	1998

Hunter1:5	Hunter1	histopathology	(none)	tumor burden (body weight at sacrifice minus body weight at diagnosis of primary tumor) [g] tum_burd 6005	MMTV PyVT transgenic	28	f		N=18	1998

Hunter1:6	Hunter1	histopathology	(none)	number of pulmonary metastases [n] mets 6006	MMTV PyVT transgenic	28	f		N=19	1998

Hunter1:7	Hunter1	histopathology	(none)	area of pulmonary metastases (x 10³) [µm²] met_area 6007	MMTV PyVT transgenic	28	f		N=14	1998

Hunter1:8	Hunter1	histopathology	(none)	total lung area (x 10³) [µm²] tot_area 6008	MMTV PyVT transgenic	28	f		N=14	1998

Hunter1:9	Hunter1	histopathology	(none)	number of pulmonary metastases per total lung area (x 10^-9) [n/µm²] ratio_mta 6009	MMTV PyVT transgenic	28	f		N=14	1998

Hunter1:10	Hunter1	histopathology	(none)	area of pulmonary metastases per number of metastases [µm²/n] met_size 6010	MMTV PyVT transgenic	28	f		N=14	1998

Hunter1:11	Hunter1	histopathology	(none)	area of pulmonary metastases per total lung area [ratio] ratio_ata 6011	MMTV PyVT transgenic	28	f		N=14	1998

Ishimori1:9	Ishimori1	histopathology	high-fat diet	fatty streak aortic lesions (0=absent, 1=present) [score] aortic_lesion_presence 14009	QTL population		f	20wks	N=294	2004

Ishimori1:10	Ishimori1	histopathology	high-fat diet	fatty streak aortic lesion size [µm²] aortic_lesion 14010	QTL population		f	20wks	N=294	2004

Ishimori1:11	Ishimori1	histopathology	high-fat diet	fatty streak aortic lesion size, log transformed [log(µm²)] aortic_lesion_log 14011	QTL population		f	20wks	N=294	2004

Klaassen1:1	Klaassen1	histopathology	cadmium	cadmium-induced toxicity to testis [designation] testis 16401 categorical	inbred	8	m	8wks		2001

Klaassen1:2	Klaassen1	histopathology	cadmium	cadmium-induced toxicity to liver [designation] liver 16402 categorical	inbred	8	m	8wks		2001

Klaassen1:3	Klaassen1	histopathology	cadmium	cadmium-induced toxicity to trigeminal ganglia [designation] ganglia 16403 categorical	inbred	8	m	8wks		2001

Korstanje2:1	Korstanje2	histopathology	(none)	percentage of glomeruli exhibiting mesangial matrix expansion [%] pct_MME 51001 6mo 12mo 20mo	inbred	29	m		N=6	2013

Leiter2:3	Leiter2	histopathology	(none)	combination score of age at type 1 diabetes onset, and insulitis severity / extent (see excel file) [score] Insulities_TimeOnset 24003	QTL population		f	14-40wks	N=310	2009

Leiter2:4	Leiter2	histopathology	(none)	insulitis severity / extent score (0-4, see excel file) [score] Insulitis 24004	QTL population		f	14-40wks	N=310	2009

Leiter2:5	Leiter2	histopathology	(none)	group mice by insulitis score (0-3, see excel file) [score] GroupInsulitis_Diabetes 24005	QTL population		f	14-40wks	N=310	2009

Li1:8	Li1	histopathology	western diet	carotid atherosclerotic lesion area size (the average of 5 largest sections) [µm²/section] Carotid_lesion-LGMax 21008	QTL population		f	12wks	N=241	2008

Lyons1:2	Lyons1	histopathology	high-fat diet	gallstones, presence (score 0=absent, 1=present) [score] gallstone_presence 13002	QTL population		m	16-18wks	N=278	2003

Lyons1:3	Lyons1	histopathology	high-fat diet	gallstones, screening (score 0=absent, 1=present, 2=solid gallstones) [score] gallstone_score 13003	QTL population		m	16-18wks	N=278	2003

Lyons1:4	Lyons1	histopathology	high-fat diet	number of gallstones [n] gallstone_count 13004	QTL population		m	16-18wks	N=278	2003

Lyons1:5	Lyons1	histopathology	high-fat diet	weight of gallstones [mg] gallstone_weight 13005	QTL population		m	16-18wks	N=278	2003

Lyons1:6	Lyons1	histopathology	high-fat diet	sandy gallstones (score 0=absence, 1-4=severity) [score] gallstone_sandy 13006	QTL population		m	16-18wks	N=278	2003

Lyons1:7	Lyons1	histopathology	high-fat diet	solid gallstones (score 0=absence, 1-4=severity) [score] gallstone_solid 13007	QTL population		m	16-18wks	N=278	2003

Lyons1:8	Lyons1	histopathology	high-fat diet	cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity) [score] ChMC_agg 13008	QTL population		m	16-18wks	N=278	2003

Lyons1:9	Lyons1	histopathology	high-fat diet	cholesterol monohydrate crystals (score 0=absence, 1-4=severity) [score] ChMC_ind 13009	QTL population		m	16-18wks	N=278	2003

Lyons2:4	Lyons2	histopathology	high-fat diet	gallbladder, mucin (score 0-4) [score] gallbladder_mucin 13104	QTL population		m	16-18wks	N=277	2003

Lyons2:5	Lyons2	histopathology	high-fat diet	gallbladder bile characteristics (score 0=no crystals, 1=crystals present, 2=solid or sandy gallstones present) [score] bile_score 13105	QTL population		m	16-18wks	N=277	2003

Lyons2:6	Lyons2	histopathology	high-fat diet	cholesterol monohydrate crystals (score 0=absent, 1-4=increasing severity) [score] gallstone_crystals 13106	QTL population		m	16-18wks	N=277	2003

Lyons2:7	Lyons2	histopathology	high-fat diet	sandy gallstones (score 0=absence, 1-4=severity) [score] gallstone_sandy 13107	QTL population		m	16-18wks	N=277	2003

Lyons2:8	Lyons2	histopathology	high-fat diet	solid gallstones (score 0=absence, 1-5=severity) [score] gallstone_solid 13108	QTL population		m	16-18wks	N=277	2003

Lyons2:9	Lyons2	histopathology	high-fat diet	number of solid gallstones [n] gallstone_count 13109	QTL population		m	16-18wks	N=277	2003

Lyons2:10	Lyons2	histopathology	high-fat diet	weight of solid gallstones [mg] gallstone_weight 13110	QTL population		m	16-18wks	N=277	2003

Lyons2:14	Lyons2	histopathology	high-fat diet	solid gallstones, presence (score 0=absent, 1=present) [score] Solid 13114	QTL population		m	16-18wks	N=277	2003

Lyons3:1	Lyons3	histopathology	high-fat diet	weight of gallstones [mg] GS_wt 14601	QTL population		m	14-20wks	N=330	2004

Lyons3:2	Lyons3	histopathology	high-fat diet	number of gallstones [n] GS_no 14602	QTL population		m	14-20wks	N=330	2004

Lyons3:3	Lyons3	histopathology	high-fat diet	gallstone score (score 0=absent, 1=crystals only, 2=sandy or solid gallstones) [score] Score_1 14603	QTL population		m	14-20wks	N=330	2004

Lyons3:4	Lyons3	histopathology	high-fat diet	cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity) [score] AggChM 14604	QTL population		m	14-20wks	N=330	2004

Lyons3:5	Lyons3	histopathology	high-fat diet	solid gallstones (score 0=absence, 4=severity) [score] Solid 14605	QTL population		m	14-20wks	N=330	2004

Lyons3:6	Lyons3	histopathology	high-fat diet	sandy gallstones (score 0=absence, 1-4=severity) [score] Sandy 14606	QTL population		m	14-20wks	N=330	2004

Lyons3:7	Lyons3	histopathology	high-fat diet	gallbladder mucin accumulation (score 0-3) 0=no mucin;1-3= mucin accumulation severity [score] Mucin 14607	QTL population		m	14-20wks	N=330	2004

Maeda1:1	Maeda1	histopathology	(none)	aortic lesion size at root, square root transformed [µm²] Sqrt_Root 60301	QTL population		both	18-20wks	N=116	2017

Maeda1:2	Maeda1	histopathology	(none)	lesion size at aortic arch, square root transformed [µm²] Sqr_Area1 60302	QTL population		both	18-20wks	N=116	2017

Maeda1:3	Maeda1	histopathology	(none)	lesion size at innominate artery, square root transformed [µm²] Sqr_Area2 60303	QTL population		both	18-20wks	N=116	2017

Maeda1:4	Maeda1	histopathology	(none)	lesion size at left common carotid artery, square root transformed [µm²] Sqr_Area3 60304	QTL population		both	18-20wks	N=116	2017

Maeda1:5	Maeda1	histopathology	(none)	lesion size at subclavian artery plus upper wall, square root transformed [µm²] Sqr_Area4 60305	QTL population		both	18-20wks	N=116	2017

Mahler1:2	Mahler1	histopathology	(none)	cecum assessment, first Principal Component CecumPC1 12102	QTL population		both	6wks	N=102	2002

Mahler1:3	Mahler1	histopathology	(none)	proximal colon assessment, first Principal Component ProxPC1 12103	QTL population		both	6wks	N=102	2002

Mahler1:4	Mahler1	histopathology	(none)	middle colon assessment, first Principal Component MidPC1 12104	QTL population		both	6wks	N=102	2002

Mahler1:5	Mahler1	histopathology	(none)	distal colon assessment, first Principal Component DistPC1 12105	QTL population		both	6wks	N=102	2002

Mahler1:6	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), first Principal Component Ulceration-PC1 12106	QTL population		both	6wks	N=102	2002

Mahler1:7	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), second Principal Component Ulceration-PC2 12107	QTL population		both	6wks	N=102	2002

Marchuk1:1	Marchuk1	histopathology	(none)	infarct volume following surgically-induced focal cerebral ischemia [mm³] infarct_vol 45001	inbred	16	both	11-13wks	N=4	2009

Mathews1:1	Mathews1	histopathology	(none)	Clinical T1DM accompanied by end-stage insulitis before necropsy (score 0=non-diabetes, 1=diabetes) [score] IDDM 13401	QTL population		f	8-40wks	N=120	2003

Mathews1:2	Mathews1	histopathology	(none)	severity of diabetes (score 0=non-diabetes, 1=diabetes, 2=severe diabetes) [score] IDDM_VS_HI 13402	QTL population		f	8-40wks	N=120	2003

Mathews1:3	Mathews1	histopathology	(none)	Clinical T1DM accompanied by end-stage insulitis diagnosed at necropsy (score 0=non-diabetes, 1=diabetes) [score] IDM 13403	QTL population		f	8-40wks	N=120	2003

Mrug1:1	Mrug1	histopathology	(none)	mean of biliary duct number [n] mean_BDN 17501	QTL population		both	10d	N=230	2005

Mrug1:2	Mrug1	histopathology	(none)	mean of log(biliary duct number) [log(n)] mean_logBDN 17502	QTL population		both	1wk	N=230	2005

Mrug1:3	Mrug1	histopathology	(none)	cholangitis severity (score 0-4, increasing severity) 0 = no/minimal inflammation, 4=severe and extensive cholangiohepatitis [score] Cholangitis 17503	QTL population		both	10d	N=230	2005

Odet1:21	Odet1	histopathology	(none)	mean seminiferous tubule radius, transverse section [µm] seminif_radius 53721	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:22	Odet1	histopathology	(none)	seminiferious epithelium length, transverse section [cm] seminif_length 53722	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:23	Odet1	histopathology	(none)	number of seminiferous tubules, transverse section [n] seminif_count 53723	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:24	Odet1	histopathology	(none)	number of seminiferous tubules with vacuoles, transverse section [n] seminif_vacuoles 53724	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:25	Odet1	histopathology	(none)	number of seminiferous tubules with many vacuoles, transverse section [n] seminif_many_vacuoles 53725	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:26	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell loss, transverse section [n] seminif_germ_loss 53726	inbred w/CC8	8	m	10-66wks	N=18	2015

Odet1:27	Odet1	histopathology	(none)	number of seminiferous tubules with abnormal germ cells, transverse section [n] seminif_germ_abnormal 53727	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:28	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell sloughing, transverse section [n] seminif_germ_slough 53728	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:41	Odet1	histopathology	(none)	percentage of sperm with normal morphology [%] sperm_normal 53741	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:42	Odet1	histopathology	(none)	percentage of sperm with abnormal head shape [%] sperm_abnormal_head 53742	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:43	Odet1	histopathology	(none)	percentage of sperm with abnormal tail bending [%] sperm_abnormal_tail 53743	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:44	Odet1	histopathology	(none)	percentage of sperm with broken tails [%] sperm_broken_tail 53744	inbred w/CC8	8	m	10-66wks	N=14	2015

Paigen1:9	Paigen1	histopathology	high-fat diet	gallbladder, mucin (score: 0-4) [score] mucin 2909	inbred	43	both	15-19wks	N=8	2000

Paigen1:10	Paigen1	histopathology	high-fat diet	gallbladder, arc (score: 0-4) [score] arc 2910	inbred	43	both	15-19wks	N=8	2000

Paigen1:11	Paigen1	histopathology	high-fat diet	gallbladder, filaments (score: 0-4) [score] filaments 2911	inbred	43	both	15-19wks	N=8	2000

Paigen1:12	Paigen1	histopathology	high-fat diet	gallbladder, small liquid crystals (score: 0-4) [score] smallLC 2912	inbred	43	both	15-19wks	N=8	2000

Paigen1:13	Paigen1	histopathology	high-fat diet	gallbladder, aggregated liquid crystals (score: 0-4) [score] agLC 2913	inbred	43	both	15-19wks	N=8	2000

Paigen1:14	Paigen1	histopathology	high-fat diet	gallbladder, fused liquid crystals (score: 0-4) [score] fusedLC 2914	inbred	43	both	15-19wks	N=8	2000

Paigen1:15	Paigen1	histopathology	high-fat diet	gallbladder, cholesterol monohydrate crystals (score: 0-4) [score] ChMC 2915	inbred	43	both	15-19wks	N=8	2000

Paigen1:16	Paigen1	histopathology	high-fat diet	gallbladder, number of sandy stones [n] sandysto 2916	inbred	43	both	15-19wks	N=8	2000

Paigen1:17	Paigen1	histopathology	high-fat diet	gallbladder, number of true gallstones [n] gs 2917	inbred	43	both	15-19wks	N=8	2000

Paigen1:18	Paigen1	histopathology	high-fat diet	gallbladder, number of sandy plus true stones [n] nstones 2918	inbred	43	both	15-19wks	N=8	2000

Paigen1:19	Paigen1	histopathology	high-fat diet	gallbladder, presence of stones (score: 1=present, 0=absent) [score] st_pres 2919	inbred	43	both	15-19wks	N=9	2000

Paigen1:30	Paigen1	histopathology	high-fat diet	liver microvacuoles (score: 0-4) [score] microvacs 2930	inbred	43	both	15-19wks	N=3	2000

Paigen1:31	Paigen1	histopathology	high-fat diet	liver macrovacuoles (score: 0-4) [score] macrovacs 2931	inbred	43	both	15-19wks	N=3	2000

Paigen1:32	Paigen1	histopathology	high-fat diet	liver inflammation (score: 0-4) [score] inflammation 2932	inbred	43	both	15-19wks	N=3	2000

Paigen1:36	Paigen1	histopathology	high-fat diet	fatty streak aortic lesion size [µm²] aortic_lesion 2936	inbred	44	both	15-19wks	N=8	2000

Paigen2:24	Paigen2	histopathology	high-fat diet	fatty streak aortic lesion size [µm²] aortic_lesion 9924	inbred w/CC7	42	both	25-27wks	N=9	2002

Paigen3:9	Paigen3	histopathology	high-fat diet	gallbladder, mucin (score: 0-4) [score] mucin 2809	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:10	Paigen3	histopathology	high-fat diet	gallbladder, arc (score: 0-4) [score] arc 2810	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:11	Paigen3	histopathology	high-fat diet	gallbladder, filaments (score: 0-4) [score] filaments 2811	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:12	Paigen3	histopathology	high-fat diet	gallbladder, small liquid crystals (score: 0-4) [score] smallLC 2812	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:13	Paigen3	histopathology	high-fat diet	gallbladder, aggregated liquid crystals (score: 0-4) [score] agLC 2813	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:14	Paigen3	histopathology	high-fat diet	gallbladder, fused liquid crystals (score: 0-4) [score] fusedLC 2814	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:15	Paigen3	histopathology	high-fat diet	gallbladder, cholesterol monohydrate crystals (score: 0-4) [score] ChMC 2815	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:16	Paigen3	histopathology	high-fat diet	gallbladder, number of sandy stones [n] sandysto 2816	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:17	Paigen3	histopathology	high-fat diet	gallbladder, number of true gallstones [n] gs 2817	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:18	Paigen3	histopathology	high-fat diet	gallbladder, number of sandy plus true stones [n] nstones 2818	obesity mutants	7	both	15-19wks	N=8	2000

Paigen3:19	Paigen3	histopathology	high-fat diet	gallbladder, presence of stones (score: 1=present, 0=absent) [score] st_pres 2819	obesity mutants	8	both	15-19wks	N=19	2000

Paigen3:30	Paigen3	histopathology	high-fat diet	liver microvacuoles (score: 0-4) [score] microvacs 2830	obesity mutants	7	both	15-19wks	N=3	2000

Paigen3:31	Paigen3	histopathology	high-fat diet	liver macrovacuoles (score: 0-4) [score] macrovacs 2831	obesity mutants	7	both	15-19wks	N=3	2000

Paigen3:32	Paigen3	histopathology	high-fat diet	liver inflammation (score: 0-4) [score] inflammation 2832	obesity mutants	7	both	15-19wks	N=3	2000

Paigen3:36	Paigen3	histopathology	high-fat diet	fatty streak aortic lesion size [µm²] aortic_lesion 2836	obesity mutants	7	both	15-19wks	N=8	2000

Payseur2:6	Payseur2	histopathology	(none)	mulinucleated syncytia [n] MNSyncytiaPerTestis 64006	QTL population		m	10-11wks	N=312	2018

Payseur2:7	Payseur2	histopathology	(none)	tubules with apoptosis [n] TubuleswApop 64007	QTL population		m	10-11wks	N=312	2018

Payseur2:8	Payseur2	histopathology	(none)	spermatogonia with apoptosis [n] ApopGonia 64008	QTL population		m	10-11wks	N=312	2018

Payseur2:9	Payseur2	histopathology	(none)	meiotic cells with apoptosis [n] ApopMeiotic 64009	QTL population		m	10-11wks	N=312	2018

Payseur2:10	Payseur2	histopathology	(none)	round spermatids with apoptosis [n] ApopRS 64010	QTL population		m	10-11wks	N=312	2018

Payseur2:11	Payseur2	histopathology	(none)	Stage VII Sertoli cells [n] VIIsertolis 64011	QTL population		m	10-11wks	N=312	2018

Payseur2:12	Payseur2	histopathology	(none)	Stage VII pachytene cells [n] VIIpachys 64012	QTL population		m	10-11wks	N=312	2018

Payseur2:13	Payseur2	histopathology	(none)	Stage VII round spermatids [n] VIIRSs 64013	QTL population		m	10-11wks	N=312	2018

Payseur2:14	Payseur2	histopathology	(none)	Stage VII pachytene cells per Sertoli cell [n] PachyperSertoli 64014	QTL population		m	10-11wks	N=312	2018

Payseur2:15	Payseur2	histopathology	(none)	Stage VII round spermatids per Sertoli cell [n] RSperSertoli 64015	QTL population		m	10-11wks	N=312	2018

Payseur2:16	Payseur2	histopathology	(none)	Stage VII round spermatids per pachytene cell [n] RSperPachy 64016	QTL population		m	10-11wks	N=312	2018

Payseur2:17	Payseur2	histopathology	(none)	Stage VII mean tubule area [µm²] VIITubuleArea 64017	QTL population		m	10-11wks	N=312	2018

Poon1:1	Poon1	histopathology	(none)	BrdU+ cells of rostral migratory stream [n/mm] RMS 47501 3mo 12mo 18mo	inbred	9	both		N=3	2013

Reifsnyder2:1	Reifsnyder2	histopathology	(none)	the week of clinical diabetes onset [n] Onset 17601	QTL population		f	12-40wks	N=185	2005

Reifsnyder2:2	Reifsnyder2	histopathology	(none)	insulitis score of diabetes-free mice, (from 0.002=virtually no insulitis, to 1.0=incipient diabetic) Insulitis_Index 17602	QTL population		f	12-40wks	N=185	2005

Reifsnyder2:3	Reifsnyder2	histopathology	(none)	first principal component of age at diabetes onset and severity/extent of insulitis Prin1 17603	QTL population		f	12-40wks	N=185	2005

Reifsnyder2:4	Reifsnyder2	histopathology	(none)	second principal component of age at diabetes onset and severity / extent of insulitis Prin2 17604	QTL population		f	12-40wks	N=185	2005

Rosen1:1	Rosen1	histopathology	(none)	corpus callosum area [mm²] corpus_callosum 47801	BXD w/par	78	both	varies	N=2	2012

Rosen1:2	Rosen1	histopathology	(none)	corpus callosum area, adjusted [mm²] corpus_callosum_adj 47802	BXD w/par	78	both	varies	N=2	2012

Rosen2:1	Rosen2	histopathology	(none)	lateral septum volume [mm³] lateral_septum 47901	BXD w/par	71	both	varies	N=3	2012

Rosen2:2	Rosen2	histopathology	(none)	lateral septum volume, adjusted [mm³] lateral_septum_adj 47902	BXD w/par	71	both	varies	N=2	2012

Rusyn5:13	Rusyn5	histopathology	high-fat diet and ethanol	liver steatosis (0-4) [score] steatosis 43013 high-fat only high-fat and ethanol	inbred	14	m	8-14wks	N=3	2011

Rusyn5:15	Rusyn5	histopathology	high-fat diet and ethanol	liver inflammation (0-2) [score] inflammation 43015 high-fat only high-fat and ethanol	inbred	14	m	8-14wks	N=3	2011

Rusyn5:17	Rusyn5	histopathology	high-fat diet and ethanol	liver necrosis (0-2) [score] necrosis 43017 high-fat only high-fat and ethanol	inbred	14	m	8-14wks	N=3	2011

Rusyn5:19	Rusyn5	histopathology	high-fat diet and ethanol	total liver histopathology (0-8) [score] total_pathology 43019 high-fat only high-fat and ethanol	inbred	14	m	8-14wks	N=3	2011

Rusyn6:14	Rusyn6	histopathology	trichloroethylene	BrdU-positive nuclei in liver (hepatocellular proliferation), relative to control group [%] BrdU_liver_tce 51214	inbred	7	m	6-7wks	N=3	2014

Rusyn6:54	Rusyn6	histopathology	trichloroethylene	BrdU-positive nuclei in kidney (proximal tubule cell proliferation), relative to control group [%] BrdU_kidney_tce 51254	inbred	7	m	6-7wks	N=3	2014

Rusyn6:55	Rusyn6	histopathology	trichloroethylene	kidney injury molecule 1 (KIM-1) positive proximal tubules [%] KIM1_kidney 51255 control TCE	inbred	7	m	6-7wks	N=4	2014

Sandell1:2	Sandell1	histopathology	(none)	articular cartilage wound healing at 12 wks post-injury [score] articular_12 49802	LGXSM w/par	14	both	20wks	N=6	2012

Sandell1:3	Sandell1	histopathology	(none)	articular cartilage wound healing at 16 wks post-injury [score] articular_16 49803	LGXSM w/par	10	both	24wks	N=4	2012

Shorter4:22	Shorter4	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110114	CC	12	m	15-33wks	N=3	2019

Shorter4:23	Shorter4	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110115	CC	12	m	15-33wks	N=3	2019

Shorter4:24	Shorter4	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110116	CC	12	m	15-33wks	N=3	2019

Shorter4:25	Shorter4	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110117	CC	12	m	15-33wks	N=3	2019

Shorter5:22	Shorter5	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110139	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:23	Shorter5	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110140	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:24	Shorter5	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110141	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:25	Shorter5	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110142	CC RIX	28	m	7-44wks	N=4	2019

Shorter8:27	Shorter8	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110182	DO population		m	12-15wks	N=150	2019

Shorter8:28	Shorter8	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110183	DO population		m	12-15wks	N=150	2019

Shorter8:29	Shorter8	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110184	DO population		m	12-15wks	N=150	2019

Shorter8:30	Shorter8	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110185	DO population		m	12-15wks	N=150	2019

Su2:6	Su2	histopathology	high-fat diet	aortic lesion size Lesion 24506	QTL population		f	14wks	N=277	2009

Su2:7	Su2	histopathology	high-fat diet	aortic lesion size, log transformed LogLesion 24507	QTL population		f	14wks	N=277	2009

Sundberg2:1	Sundberg2	histopathology	(none)	Alopecia areata diagnosis (score 0=no alopecia, 1=alopecia) [score] alopecia_score 13501	QTL population		both	52wks	N=184	2003

Threadgill1:4	Threadgill1	histopathology	acetaminophen	necrosis [%] liver_necrosis 19404 dose (mg/kg): control 100 200 300	inbred w/CC7	37	m	8-17wks	N=2	2005

Threadgill2:3	Threadgill2	histopathology	acetaminophen	liver necrosis score [%] liver_necrosis 39603	inbred	5	m	6-8wks	N=5	2005

Threadgill2:4	Threadgill2	histopathology	acetaminophen	percent nitrotyrosine staining (marker of hepatocyte injury) [%] pct_nitrotyrosine 39604	inbred	5	m	6-8wks	N=5	2005

Wahlsten1:6	Wahlsten1	histopathology	(none)	length of corpus callosum at mid-sagittal plane [mm] cc_length 10806	inbred	21	both	12wks	N=10	2003

Wahlsten1:7	Wahlsten1	histopathology	(none)	length of hippocampal commissure at mid-sagittal plane [mm] hc_length 10807	inbred	21	both	12wks	N=10	2003

Wahlsten1:8	Wahlsten1	histopathology	(none)	length of anterior commissure at mid-sagittal plane [mm] ac_length 10808	inbred	21	both	12wks	N=10	2003

Wahlsten1:9	Wahlsten1	histopathology	(none)	cross-sectional area of corpus callosum at midplane [mm²] cc_area 10809	inbred	21	both	12wks	N=10	2003

Wahlsten1:10	Wahlsten1	histopathology	(none)	cross-sectional area of hippocampal commissure at midplane [mm²] hc_area 10810	inbred	21	both	12wks	N=10	2003

Wahlsten1:11	Wahlsten1	histopathology	(none)	cross-sectional area of anterior commissure at midplane [mm²] ac_area 10811	inbred	21	both	12wks	N=10	2003

Wahlsten1:12	Wahlsten1	histopathology	(none)	corpus callosum index (0=absent, 1=normal, <0.65 is abnormal) [score] cc_index 10812	inbred	21	both	12wks	N=10	2003

Wahlsten1:13	Wahlsten1	histopathology	(none)	hippocampal commissure index (0=absent, 1=normal, <0.5 is abnormal) [score] hc_index 10813	inbred	21	both	12wks	N=10	2003

Wahlsten1:14	Wahlsten1	histopathology	(none)	anterior commissure index (0=absent, 1=normal, <.60 is abnormal) [score] ac_index 10814	inbred	21	both	12wks	N=10	2003

Wang1:27	Wang1	histopathology	high-fat diet	fatty streak aortic lesion size [µm²] aortic_lesion 13717	QTL population		f	23wks	N=100	2003

Wittenburg1:5	Wittenburg1	histopathology	high-fat diet	gallbladder, mucin (score 0-4), log transformed [score] gallbladder_mucin_log 12605	QTL population		both	18-20wks	N=130	2002

Wittenburg1:6	Wittenburg1	histopathology	high-fat diet	gallstones, presence (score 0=absent, 1=present) [score] gallstone_presence 12606	QTL population		both	18-20wks	N=130	2002

Wittenburg1:7	Wittenburg1	histopathology	high-fat diet	gallstones, number [n] gallstone_count 12607	QTL population		both	18-20wks	N=130	2002

Wittenburg1:8	Wittenburg1	histopathology	high-fat diet	weight of solid gallstones [mg] gallstone_wt 12608	QTL population		both	18-20wks	N=130	2002

Wittenburg1:9	Wittenburg1	histopathology	high-fat diet	gallstone severity (score 0=absent, 1=crystals, 2=stones) [score] gallstone_score 12609	QTL population		both	18-20wks	N=130	2002

Wittenburg1:10	Wittenburg1	histopathology	high-fat diet	gallstones volume gallstone_vol 12610	QTL population		both	18-20wks	N=130	2002

Wittenburg2:6	Wittenburg2	histopathology	high-fat diet	gallbladder, mucin (score 0-5) [score] gallbladder_mucin 13806	QTL population		both	14-16wks	N=152	2003

Wittenburg2:7	Wittenburg2	histopathology	high-fat diet	gallstones, presence (score 0=absent, 1=present) [score] gallstone_presence 13807	QTL population		both	14-16wks	N=152	2003

Wittenburg2:8	Wittenburg2	histopathology	high-fat diet	gallstones, screening (score 0=absent, 1=present, 2=solid gallstones) [score] gallstone_screen 13808	QTL population		both	14-16wks	N=152	2003

Wittenburg2:9	Wittenburg2	histopathology	high-fat diet	number of solid gallstones [n] gallstone_count 13809	QTL population		both	14-16wks	N=152	2003

Wittenburg2:10	Wittenburg2	histopathology	high-fat diet	weight of solid gallstones [mg] gallstone_wt 13810	QTL population		both	14-16wks	N=152	2003

Wittenburg2:11	Wittenburg2	histopathology	high-fat diet	weight of solid gallstones, log transformed [log(mg)] gallstone_wt_log 13811	QTL population		both	14-16wks	N=152	2003

Wittenburg2:12	Wittenburg2	histopathology	high-fat diet	weight of solid gallstones ([mg] + 1), log10 transformed [log(mg)] gallstone_wt_log10 13812	QTL population		both	14-16wks	N=152	2003

Wittenburg2:13	Wittenburg2	histopathology	high-fat diet	weight of solid gallstones, square root [sqrt(mg)] gallstone_wt_sqr 13813	QTL population		both	14-16wks	N=152	2003

Wittenburg2:14	Wittenburg2	histopathology	high-fat diet	gallstones, presence of sandy stones (score 0=absent, 1=present) [score] gallstone_sandy 13814	QTL population		both	14-16wks	N=152	2003

Wittenburg2:15	Wittenburg2	histopathology	high-fat diet	gallbladder, cholesterol monohydrate crystals (score 0-5) [score] gallstone_crystals 13815	QTL population		both	14-16wks	N=152	2003

Wittenburg2:16	Wittenburg2	histopathology	high-fat diet	gallstone severity (score 0-3) [score] gallstone_score 13816	QTL population		both	14-16wks	N=152	2003

Wittenburg3:5	Wittenburg3	histopathology	high-fat diet	gallstones, presence (score 0=absent, 1=present) [score] gallstone_presence 18205	QTL population		both	14-16wks	N=162	2005

Other available data sets:

Data set	Procedure	What's in this data set	Panel	Sex	Age (weeks)	Year
Esposito1	histopathology	Frequency rates of disorders seen during histopathology survey of various organs.	inbred (6)	both		2013
ITP1	histopathology with (R/S)-1,3-butanediol, 17-a-estradiol, 17-dimethylaminoethylamino-17-demethoxygeldanamycin hydrochloride, 2-(2-Hydroxyphenyl)benzoxazole, 3-(3-hydroxybenzyl)-5-methylbenzo[d]oxazol-2(3H)-one, 4-OH-a-phenyl-N-tert-butyl nitrone, 4-phenylbutyrate, acarbose, aspirin, astaxanthin, b-guanidinopropionic acid, caffeic acid phenethyl ester, canagliflozin, captopril, candesartan cilexetil, curcumin, dimethyl fumarate, enalapril, fisetin, fish oil, geranylgeranyl acetone, glycine, green tea extract, INT-767 FXR/TGR5 agonist, inulin, L-Leucine, meclizine, medium-chain triglyceride, metformin, metformin plus rapamycin, methylene blue, minocycline, MitoQ, mycophenolic acid, nicotinamide riboside, nitroflurbiprofen, nordihydroguaiaretic acid, oxaloacetic acid, PB125, protandim, rapamycin, rapamycin plus acarbose, resveratrol, SG1002, simvastatin, sulindac, syringaresinol, TM5441, ursodeoxycholic acid, ursolic acid, 16-a-hydroxyestriol, 2,4-dinitrophenol, a-Ketoglutarate, Hydralazine, Nebivolol, Sodium thiosulfate	Pathology. Percent lesions in liver degeneration, lung tumor, renal organs. Intervention vs. controls.	UM-HET3 population	both	various	2004-2024

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