Project measure / variable:   Shorter4   normal_sperm

ID, description, units MPD:110114   normal_sperm   percentage of sperm with normal morphology   [%]  
Data set, strains Shorter4   CC   12 strains     sex: m     age: 15-33wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Shorter4 - percentage of sperm with normal morphology



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested12 strains
Mean of the strain means43.922   %
Median of the strain means43.934   %
SD of the strain means± 14.672
Coefficient of variation (CV)0.3341
Min–max range of strain means20.4   –   64.13   %
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 11 7633.709 693.9735 5.7922 < 0.0001
Residuals 28 3354.75 119.8125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc m 34.5 13.597   3 7.8501 0.3941 26.6, 50.2 -0.64
CC002/Unc m 20.4 13.158   4 6.5789 0.645 5.4, 33.9 -1.6
CC003/Unc m 47.667 10.623   3 6.1331 0.2229 35.5, 55.1 0.26
CC008/GeniUnc m 58.45 10.112   2   7.15 0.173 51.3, 65.6 0.99
CC010/GeniUnc m 22.2 15.437   4 7.7185 0.6954 13.6, 45.3 -1.48
CC011/Unc m 36.367 10.464   3 6.0416 0.2877 25.0, 45.6 -0.51
CC013/GeniUnc m 64.13 9.9289   3 5.7325 0.1548 56.3, 75.3 1.38
CC018/Unc m 56.2 3.923   3 2.265 0.0698 51.7, 58.9 0.84
CC021/Unc m 40.2 11.992   7 4.5326 0.2983 18.7, 55.2 -0.25
CC034/Unc m 53.5 2.4698   4 1.2349 0.0462 50.2, 56.1 0.65
CC053/Unc m 58.8 9.6167   2   6.8 0.1635 52.0, 65.6 1.01
CC065/Unc m 34.65 1.4849   2   1.05 0.0429 33.6, 35.7 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc m 34.5 6.3196123299 47.4451390299 21.5548609701
CC002/Unc m 20.4 5.4729448197 31.6108192554 9.1891807446
CC003/Unc m 47.6666666667 6.3196123299 60.6118056966 34.7215276368
CC008/GeniUnc m 58.45 7.7399127902 74.3044926363 42.5955073637
CC010/GeniUnc m 22.2 5.4729448197 33.4108192554 10.9891807446
CC011/Unc m 36.3666666667 6.3196123299 49.3118056966 23.4215276368
CC013/GeniUnc m 64.1333333333 6.3196123299 77.0784723632 51.1881943034
CC018/Unc m 56.2 6.3196123299 69.1451390299 43.2548609701
CC021/Unc m 40.2 4.1371574092 48.6745827838 31.7254172162
CC034/Unc m 53.5 5.4729448197 64.7108192554 42.2891807446
CC053/Unc m 58.8 7.7399127902 74.6544926363 42.9455073637
CC065/Unc m 34.65 7.7399127902 50.5044926363 18.7955073637




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA