Project measure / variable:   Odet1   seminif_vacuoles

ID, description, units MPD:53724   seminif_vacuoles   number of seminiferous tubules with vacuoles, transverse section   [n]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
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  STRAIN COMPARISON PLOT
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Odet1 - number of seminiferous tubules with vacuoles, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means11.6   n
Median of the strain means8.12   n
SD of the strain means± 10.1
Coefficient of variation (CV)0.873
Min–max range of strain means2.42   –   34.4   n
Mean sample size per strain25.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 20339.7029 2905.6718 18.1843 < 0.0001
Residuals 199 31798.2102 159.79


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 5.5 13.8   32 2.44 2.51 -0.6
A/J m 9.85 9.65   26 1.89 0.98 2.0, 36.0 -0.17
C57BL/6J m 6.39 3.74   36 0.624 0.586 1.0, 16.0 -0.51
CAST/EiJ m 2.42 2.06   19 0.473 0.852 -0.91
NOD/ShiLtJ m 15.0 15.2   26 2.98 1.02 3.0, 65.0 0.34
NZO/HlLtJ m 6.18 15.1   22 3.21 2.44 -0.53
PWK/PhJ m 12.8 8.34   16 2.08 0.651 3.0, 36.0 0.12
WSB/EiJ m 34.4 19.8   30 3.62 0.577 9.0, 103.0 2.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 5.5 2.2346 9.9065 1.0935
A/J m 9.8462 2.4791 14.7348 4.9575
C57BL/6J m 6.3889 2.1068 10.5434 2.2344
CAST/EiJ m 2.4211 2.9 8.1397 0.0
NOD/ShiLtJ m 14.9615 2.4791 19.8501 10.0729
NZO/HlLtJ m 6.1818 2.695 11.4963 0.8673
PWK/PhJ m 12.8125 3.1602 19.0443 6.5807
WSB/EiJ m 34.3667 2.3079 38.9177 29.8156




  GWAS USING LINEAR MIXED MODELS