MPD: Phenotype measures mapped to VT:0015057, head physiology trait

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Phenotype measures associated with ontology term
VT:0015057 'head physiology trait'

All measures in this list are mapped to the ontology descendants of VT:0015057. None are mapped to VT:0015057 directly.

VT:0000353 vestibular system physiology trait
VT:0000366 brainstem auditory evoked potential
VT:0001280 vibrissa retention trait
VT:0001349 tear production trait
VT:0002001 visual acuity trait
VT:0002090 vision trait
VT:0002104 hearing physiology trait

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Brown2:5	Brown2	Morris water maze	(none)	acquistion training mean distance traveled to find hidden platform, day 3 [cm] acq_dist_d3 22505	inbred	14	both	10-18wks	N=9	2004

Brown2:6	Brown2	Morris water maze	(none)	reversal training mean distance traveled to find hidden platform, day 3 [cm] rev_dist_d3 22506	inbred	14	both	10-18wks	N=9	2004

Brown2:7	Brown2	Morris water maze	(none)	acquisition training mean velocity, day3 [cm/s] acq_vel_d3 22507	inbred	14	both	10-18wks	N=9	2004

Brown2:8	Brown2	Morris water maze	(none)	reversal training mean velocity, day 3 [cm/s] rev_vel_d3 22508	inbred	14	both	10-18wks	N=9	2004

Brown2:11	Brown2	Barnes circular maze	(none)	acquisition training mean errors [n] acq_err 22511 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:13	Brown2	Barnes circular maze	(none)	reversal training mean errors [n] rev_err 22513 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:15	Brown2	Barnes circular maze	(none)	acquisition training mean latency to escape [s] acq_lat 22515 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:17	Brown2	Barnes circular maze	(none)	reversal training mean latency to escape [s] rev_lat 22517 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:19	Brown2	Barnes circular maze	(none)	probe trial correct quadrant total entries [n] probe_corr_ent 22519	inbred	13	both	10-18wks	N=11	2004

Brown2:20	Brown2	Barnes circular maze	(none)	probe trial correct quadrant duration [s] probe_corr_dur 22520	inbred	13	both	10-18wks	N=11	2004

Brown2:21	Brown2	Barnes circular maze	(none)	probe trial percent correct quadrant [%] probe_corr_pct 22521	inbred	13	both	10-18wks	N=11	2004

Brown2:41	Brown2	Morris water maze	(none)	acquistion training mean latency to find hidden platform, day 3 [s] acq_lat_d3 22541	inbred	14	both	10-18wks	N=10	2004

Brown2:42	Brown2	Morris water maze	(none)	reversal training mean latency to find hidden platform, day 3 [s] rev_lat_d3 22542	inbred	14	both	10-18wks	N=10	2004

Brown2:43	Brown2	Morris water maze	(none)	probe trial duration, correct quadrant [s] probe_quad_corr 22543	inbred	14	both	10-18wks	N=10	2004

Brown2:44	Brown2	Morris water maze	(none)	probe trial percent time, correct quadrant [%] MWMprobe_corr_pct 22544	inbred	14	both	10-18wks	N=10	2004

Brown2:45	Brown2	Morris water maze	(none)	mean time within pool edge, across all aquistion and reversal trials [s] thigmotaxia_ave 22545	inbred	14	both	10-18wks	N=10	2004

Brown2:46	Brown2	Morris water maze	(none)	mean latency to find visible platform [s] vis_lat 22546	inbred	14	both	10-18wks	N=10	2004

Brown2:51	Brown2	visual water box	(none)	visual discrimination, detection percent correct performance, 0.17 grating threshold, day 8 [%] pct_vis_detec_d8 22551	inbred	14	both	10-18wks	N=7	2004

Brown2:52	Brown2	visual water box	(none)	visual discrimination, pattern discrimination, percent correct performance, 0.17 grating threshold, day 8 [%] pct_pat_disc_d8 22552	inbred	14	both	10-18wks	N=7	2004

Brown2:53	Brown2	visual water box	(none)	visual acuity, percent correct performance [%] pct_vis_acuit 22553 grating threshold: 0.17 (low) 0.32 0.64 (high)	inbred	14	both	10-18wks	N=7	2004

Brown2:55	Brown2	visual water box	(none)	visual discrimination, detection mean latency to reach cued platform, day 8 [s] vis_detec_ave_d8 22555	inbred	14	both	10-18wks	N=7	2004

Brown2:56	Brown2	visual water box	(none)	visual discrimination, pattern discrimination mean latency to reach cued platform, day 8 [s] pat_disc_ave_d8 22556	inbred	14	both	10-18wks	N=7	2004

Brown2:57	Brown2	visual water box	(none)	latency to reach cued platform [s] vis_acuit 22557 grating threshold: 0.17 (low) 0.32 0.64 (high) overall mean	inbred	14	both	10-18wks	N=7	2004

GMC03:12	GMC03	observation (SHIRPA)	(none)	whiskers (0=present, 1=absent) [score] whiskers 55212	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC14:61	GMC14	virtual optomotor	(none)	threshold of spatial frequency (number of cycles that fall within one degree of visual angle), virtual drum [n/deg] spatial_freq 56361	inbred w/CC8	3	both	14-16wks	N=16	2018

GMC17:11	GMC17	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level, click stimulus [dB] click 56611	inbred w/CC7	7	both	17-18wks	N=13	2018

GMC17:12	GMC17	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip 56612 6kHz 12 kHz 18 kHz 24 kHz 30 kHz	inbred w/CC7	7	both	17-18wks	N=13	2018

JaxCC1:9047	JaxCC1	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip 89047 6kHz pip 12kHz pip 18kHz pip 24kHz pip 30kHz pip	CC	18	both	15-17wks	N=3	2017

JaxKOMP-EAP:173	JaxKOMP-EAP	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] ABR minimum_threshold 100501 6 kHz pip 12 kHz pip 18 kHz pip 24 kHz pip 30 kHz pip	KOMP	1739	both	10wks	N=4	2021

JaxKOMP-EAP:308	JaxKOMP-EAP	slit lamp	(none)	lacrimation lacrimation 100635 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-LAP:281	JaxKOMP-LAP	slit lamp	(none)	lacrimation lacrimation 101635 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:283	JaxKOMP-LAP	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip minimum_threshold 101501 6 kHz pip 12 kHz pip 18 kHz pip 24 kHz pip 30 kHz pip	KOMP		both	74-78wks	N=4	2017

Jaxpheno8:1	Jaxpheno8	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] ABR 35001 click 8kHz tone 16kHz tone 32kHz tone	inbred	7	m	10-13wks	N=9	2010

Johnson1:2	Johnson1	ABR test	(none)	auditory brainstem response (ABR) threshold, 3-12 wk old group, sound pressure level [dB] pip_yng 1402 click 8kHz pip 16kHz pip 32kHz pip	inbred	42	both	3-12wks	N=7	2000

Johnson1:7	Johnson1	ABR test	(none)	auditory brainstem response (ABR) threshold, 15-72 wk old group, sound pressure level [dB] pip_old 1407 click 8kHz pip 16kHz pip 32kHz pip	inbred	27	both	15-72wks	N=12	2000

Johnson3:1	Johnson3	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] ABR 42501 click 8kHZ tone 16kHz tone 32kHz tone	B6.A consomic w/par	24	both	23-30wks	N=7	2012

Johnson4:1	Johnson4	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] ABR 42601 click 8kHZ tone 16kHz tone 32kHz tone	B6.PWD consomic w/par	28	both	49-63wks	N=8	2012

Jones1:1	Jones1	vestibular stimulus test	(none)	threshold stimulus response level (dB re: 1.0 g/ms) [dB] threshold 14201	inbred	18	both	5-56wks	N=4	2003

Jones1:2	Jones1	vestibular stimulus test	(none)	latency of 1st positive response peak (P1), VsEPs waveform [µs] latency_PosPeak1 14202	inbred	18	both	5-56wks	N=4	2003

Jones1:3	Jones1	vestibular stimulus test	(none)	latency of 2nd positive response peak (P2), VsEPs waveform [µs] latency_PosPeak2 14203	inbred	18	both	5-56wks	N=4	2003

Jones1:5	Jones1	vestibular stimulus test	(none)	amplitude of 1st positive response peak (P1), VsEPs waveform [µV] amplitude_P1 14205	inbred	18	both	5-56wks	N=4	2003

Jones1:6	Jones1	vestibular stimulus test	(none)	amplitude of 2nd positive response peak (P2), VsEPs waveform [µV] amplitude_P2 14206	inbred	16	both	5-56wks	N=3	2003

Jones1:7	Jones1	vestibular stimulus test	(none)	latency of 3rd positive response peak (P3), VsEPs waveform [µs] latency_PosPeak3 14207	inbred	13	both	5-56wks	N=3	2003

Schalkwyk1:21	Schalkwyk1	Morris water maze	(none)	latency to reach visible platform, 1 min test [s] laten_visplat_MWM 34521	inbred	8	m	9-11wks	N=11	2010

Schalkwyk1:22	Schalkwyk1	Morris water maze	(none)	latency to reach hidden platform, 1 min test [s] laten_hidplat 34522 trial: 1 2 3 4 5 6 7	inbred	8	m	9-11wks	N=11	2010

Schalkwyk1:29	Schalkwyk1	Morris water maze	(none)	latency to reach reversed platform, 1 min test [s] laten_revplat 34529 trial 1 trial 2	inbred	8	m	9-11wks	N=11	2010

Zheng1:1	Zheng1	tympanometry	(none)	tympanic membrane compliance, right ear [mL] Rcompliance 29801	inbred	61	both	5-68wks	N=4	2008

Zheng1:2	Zheng1	tympanometry	(none)	outer ear canal equivalent volume, right ear [mL] Rvolume 29802	inbred	61	both	5-68wks	N=4	2008

Zheng1:3	Zheng1	tympanometry	(none)	middle ear gradient at maximum compliance, right ear [mL] Rgradient 29803	inbred	61	both	5-68wks	N=4	2008

Zheng1:4	Zheng1	tympanometry	(none)	middle ear pressure at maximum compliance, right ear [daPa] Rpressure 29804	inbred	61	both	5-68wks	N=4	2008

Zheng1:5	Zheng1	tympanometry	(none)	tympanic membrane compliance, left ear [mL] Lcompliance 29805	inbred	61	both	5-68wks	N=4	2008

Zheng1:6	Zheng1	tympanometry	(none)	outer ear canal equivalent volume, left ear [mL] Lvolume 29806	inbred	61	both	5-68wks	N=4	2008

Zheng1:7	Zheng1	tympanometry	(none)	middle ear gradient at maximum compliance, left ear [mL] Lgradient 29807	inbred	61	both	5-68wks	N=4	2008

Zheng1:8	Zheng1	tympanometry	(none)	middle ear pressure at maximum compliance, left ear [daPa] Lpressure 29808	inbred	61	both	5-68wks	N=4	2008

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