MPD: Data set: Jaxpheno8

Jaxpheno8 downloads
• Download Jaxpheno8 project data set animal data, as uploaded
• Download Jaxpheno8 animal data matrix with factor-related expansion applied as necessary
• Download Jaxpheno8 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Jaxpheno8 measures:

MA:0000062 aorta
MA:0000072 heart
MA:0000083 heart septum
MA:0000088 mitral valve
MA:0000090 tricuspid valve
MA:0000092 heart left ventricle
MA:0002031 pulmonary artery
MA:0002443 auditory system
MP:0000233 abnormal blood flow velocity
MP:0000304 abnormal cardiac stroke volume
MP:0001627 abnormal cardiac output
MP:0001629 abnormal heart rate
MP:0003921 abnormal heart left ventricle morphology
MP:0004738 abnormal auditory brainstem response
MP:0011925 abnormal heart echocardiography feature
MP:0011928 abnormal mitral valve flow
MP:0011929 abnormal aortic valve flow
MP:0011930 abnormal tricuspid valve flow
MP:0011931 abnormal pulmonary valve flow
MP:0020135 abnormal heart ventricle wall thickness
MP:0020136 abnormal interventricular septum thickness
VT:0000231 heart excitatory physiology trait
VT:0000261 arterial blood flow trait
VT:0000366 brainstem auditory evoked potential
VT:0005294 heart ventricle morphology trait
VT:0007075 heart left ventricle wall thickness
VT:0007086 heart ventricle septum thickness
VT:0010486 cardiac output trait
VT:0010490 aorta blood flow trait
VT:2000000 arterial blood pressure trait
VT:2000009 heart pumping trait

Institutional authorship	Jackson Laboratory
Investigators	James Denegre The Jackson Laboratory, Bar Harbor, ME
Participants	Denegre J, Yang Y, Nicholson A, Davis C, Ryan J, McFarland H
Contact	James Denegre james.denegre@jax.org
Affiliated Center	JAX Phenotyping Center
Project type	Phenotype strain survey data set
MPD identifiers	Jaxpheno8 MPD:350
Data changelog	1 update/correction. Initial release date: 08/2010.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Animals were evaluated using ultrasound analysis and auditory evoked potential measurement.

Procedures conducted:

• ABR test		Auditory brainstem response.
• echocardiography		Cardiovascular function and morphology.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Jaxpheno8:1	Jaxpheno8	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] ABR 35001 click 8kHz tone 16kHz tone 32kHz tone	inbred	7	m	10-13wks	N=9

Jaxpheno8:8	Jaxpheno8	echocardiography	(none)	aortic mean peak pressure gradient [mmHg] Ao_Pmean 35008	inbred	6	m	12wks	N=5

Jaxpheno8:9	Jaxpheno8	echocardiography	(none)	aortic maximum pressure gradient [mmHg] Ao_Pmax 35009	inbred	6	m	12wks	N=5

Jaxpheno8:10	Jaxpheno8	echocardiography	(none)	aortic blood flow velocity [mm/s] Ao_V 35010	inbred	6	m	12wks	N=5

Jaxpheno8:11	Jaxpheno8	echocardiography	(none)	aortic blood flow mean peak velocity, velocity time integral [mm/s] Ao_Vmean 35011	inbred	6	m	12wks	N=5

Jaxpheno8:12	Jaxpheno8	echocardiography	(none)	aortic blood flow maximum velocity, velocity time integral [mm/s] Ao_Vmax 35012	inbred	6	m	12wks	N=5

Jaxpheno8:13	Jaxpheno8	echocardiography	(none)	aortic velocity time integral [cm] Ao_VTI 35013	inbred	6	m	12wks	N=5

Jaxpheno8:15	Jaxpheno8	echocardiography	(none)	heart rate, M-Mode parasternal short axis [n/min] HR_echo 35015	inbred	6	m	12wks	N=5

Jaxpheno8:17	Jaxpheno8	echocardiography	(none)	interventricular septum thickness [mm] IVS 35017 diastolic systolic	inbred	6	m	12wks	N=5

Jaxpheno8:19	Jaxpheno8	echocardiography	(none)	left ventricle anterior wall thickness [mm] LV_AW 35019 diastolic systolic	inbred	6	m	12wks	N=5

Jaxpheno8:21	Jaxpheno8	echocardiography	(none)	left ventricle posterior wall thickness [mm] LV_PW 35021 diastolic systolic	inbred	6	m	12wks	N=5

Jaxpheno8:23	Jaxpheno8	echocardiography	(none)	left ventricle internal dimension [mm] LVID 35023 diastolic systolic	inbred	6	m	12wks	N=5

Jaxpheno8:25	Jaxpheno8	echocardiography	(none)	left ventricle volume [µL] LV_vol 35025 diastolic systolic	inbred	6	m	12wks	N=5

Jaxpheno8:30	Jaxpheno8	echocardiography	(none)	left ventricle cardiac output [mL/min] LV_CO 35030	inbred	6	m	12wks	N=5

Jaxpheno8:31	Jaxpheno8	echocardiography	(none)	left ventricle ejection fraction [%] LV_pctEF 35031	inbred	6	m	12wks	N=5

Jaxpheno8:32	Jaxpheno8	echocardiography	(none)	left ventricle fractional shortening [%] LV_pctFS 35032	inbred	6	m	12wks	N=5

Jaxpheno8:33	Jaxpheno8	echocardiography	(none)	left ventricle stroke volume [µL] LV_SV 35033	inbred	6	m	12wks	N=5

Jaxpheno8:35	Jaxpheno8	echocardiography	(none)	mitral valve peak A-wave velocity [mm/s] MV_A_V 35035	inbred	6	m	12wks	N=4

Jaxpheno8:36	Jaxpheno8	echocardiography	(none)	mitral valve peak E-wave velocity [mm/s] MV_E_V 35036	inbred	6	m	12wks	N=4

Jaxpheno8:37	Jaxpheno8	echocardiography	(none)	tricuspid valve peak A-wave velocity [mm/s] TV_A_V 35037	inbred	6	m	12wks	N=4

Jaxpheno8:38	Jaxpheno8	echocardiography	(none)	tricuspid valve peak E-wave velocity [mm/s] TV_E_V 35038	inbred	6	m	12wks	N=4

Jaxpheno8:40	Jaxpheno8	echocardiography	(none)	pulmonary artery blood flow velocity [mm/s] PA_V 35040	inbred	6	m	12wks	N=4

Jaxpheno8:41	Jaxpheno8	echocardiography	(none)	pulmonary artery blood flow mean peak velocity, velocity time integral [mm/s] PA_Vmean 35041	inbred	6	m	12wks	N=4

Jaxpheno8:42	Jaxpheno8	echocardiography	(none)	pulmonary artery blood flow maximum velocity, velocity time integral [mm/s] PA_Vmax 35042	inbred	6	m	12wks	N=4

Jaxpheno8:43	Jaxpheno8	echocardiography	(none)	pulmonary artery velocity time integral [cm] PA_VTI 35043	inbred	6	m	12wks	N=4

Jaxpheno8:45	Jaxpheno8	echocardiography	(none)	pulmonary artery mean pressure gradient [mmHg] PA_Pmean 35045	inbred	6	m	12wks	N=4

Jaxpheno8:46	Jaxpheno8	echocardiography	(none)	pulmonary artery maximum pressure gradient [mmHg] PA_Pmax 35046	inbred	6	m	12wks	N=4

Jaxpheno8: Echocardiography and auditory brainstem response survey in males of 7 inbred strains of mice (2010)