MPD: Phenotype measures mapped to VT:0001502, behavioral circadian rhythm trait

Phenotype measures directly associated with ontology term
VT:0001502 'behavioral circadian rhythm trait'

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Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Chesler2:55	Chesler2	monitoring system	(none)	percentage of time spent sleeping, baseline [%] pct_sleep_daily 43481	CC diallel w/par	57	both	7-15wks	N=3	2011

Chesler2:56	Chesler2	monitoring system	(none)	percentage of time spent sleeping during dark period, baseline [%] pct_sleep_dark 43482	CC diallel w/par	57	both	7-15wks	N=3	2011

Chesler2:57	Chesler2	monitoring system	(none)	percentage of time spent sleeping, following sleep deprivation [%] pct_daily_deprivation 43483	CC diallel w/par	57	both	7-15wks	N=2	2011

Chesler2:58	Chesler2	monitoring system	(none)	percentage of time spent sleeping during dark period, following sleep deprivation [%] pct_dark_deprivation 43484	CC diallel w/par	57	both	7-15wks	N=2	2011

Chesler2:59	Chesler2	monitoring system	(none)	peak activity time from dark onset, following sleep deprivation [h] act_dark_deprivation 43485	CC diallel w/par	57	both	7-15wks	N=2	2011

Chesler3:81	Chesler3	monitoring system	(none)	percentage of time sleeping, baseline [%] pct_sleep 43581 total dark period	CC pre w/par	301	both	7-15wks	N=2	2011

Chesler3:83	Chesler3	monitoring system	(none)	percentage of time sleeping, after sleep deprivation [%] deprivation 43583 total dark period peak activity	CC pre w/par	301	both	7-15wks	N=2	2011

Kumar1:6	Kumar1	circadian wheel running	(none)	circadian period [h] Tau1_(ChiSq) 29006	QTL population		both	10-14wks	N=122	2014

Kumar1:7	Kumar1	circadian wheel running	(none)	amplitude Power_FFT 29007	QTL population		both	10-14wks	N=122	2014

Kumar1:8	Kumar1	circadian wheel running	(none)	revolutions per minute on wheels [n/min] Avg_Counts 29008	QTL population		both	10-14wks	N=122	2014

Loos2:1	Loos2	home cage monitoring	(none)	cumulative number of activity bouts, over 3 days of testing, log10 transformed [log(n)] activity_num 54001 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:3	Loos2	home cage monitoring	(none)	cumulative duration of activity during dark phase, over 3 days of testing [s] activity_dur_DK 54003	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:4	Loos2	home cage monitoring	(none)	cumulative duration of activity during light phase, over 3 days of testing, log10 transformed [log(s)] activity_dur_LT 54004	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:5	Loos2	home cage monitoring	(none)	mean duration per activity bout, over 3 days of testing, log10 transformed [log(s)] activity_mean_dur 54005 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:7	Loos2	home cage monitoring	(none)	habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed [log(ratio)] activity_dur_hab 54007 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:11	Loos2	home cage monitoring	(none)	dark-light index describing difference in cumulative activity duration between light and dark phase, over 3 days of testing [ratio] activity_dur_DKLT_index 54011	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:12	Loos2	home cage monitoring	(none)	cumulative duration in spout zone, over 3 days of testing, log10 transformed [log(s)] spout_dur 54012	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:14	Loos2	home cage monitoring	(none)	cumulative duration in feeding zone during dark phase, over 3 days of testing, log10 transformed [log(s)] feeding_dur_DK 54014	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:15	Loos2	home cage monitoring	(none)	feeding zone, duration [s] feeding_dur_LT 54015	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:16	Loos2	home cage monitoring	(none)	cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed [log(n)] onshelter_num 54016 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:18	Loos2	home cage monitoring	(none)	cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed [log(s)] onshelter_dur 54018 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:22	Loos2	home cage monitoring	(none)	change in activity proportion: anticipation of phase change, over 3 days of testing activity_anticipation 54022 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:24	Loos2	home cage monitoring	(none)	change in activity proportion: response to phase onset, over 3 days of testing activity_response 54024 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:26	Loos2	home cage monitoring	(none)	change in Spout zone duration: anticipation of phase change, over 3 days of testing spout_anticipation 54026 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:28	Loos2	home cage monitoring	(none)	change in Spout zone duration: response to phase onset, over 3 days of testing spout_response 54028 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:32	Loos2	home cage monitoring	(none)	change in Feeding zone duration: anticipation of phase change, over 3 days of testing feeding_anticipation 54032 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:34	Loos2	home cage monitoring	(none)	change in Feeding zone duration: response to phase onset, over 3 days of testing feeding_response 54034 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:36	Loos2	home cage monitoring	(none)	change in OnShelter zone duration: anticipation of phase change, over 3 days of testing onshelter_anticipation 54036 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:38	Loos2	home cage monitoring	(none)	change in OnShelter zone duration: response to phase onset, over 3 days of testing onshelter_response 54038 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:42	Loos2	home cage monitoring	(none)	cumulative long movement number, over 3 days of testing, log10 transformed [log(n)] long_move_num 54042 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:44	Loos2	home cage monitoring	(none)	cumulative long movement distance, over 3 days of testing, log10 transformed [log(cm)] long_move_dist 54044 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:46	Loos2	home cage monitoring	(none)	average velocity of 95th percentile fastest long movement segments, over 3 days of testing, log10 transformed [log(cm/s)] long_move_max_vel 54046	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:47	Loos2	home cage monitoring	(none)	cut-off value to separate short and long movements, over 3 days of testing, log10 transformed [log(cm)] long_move_threshold 54047	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:48	Loos2	home cage monitoring	(none)	cumulative short movement number, over 3 days of testing, log10 transformed [log(n)] short_move_num 54048 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:52	Loos2	home cage monitoring	(none)	cumulative short movement distance, over 3 days of testing, log10 transformed [log(cm)] short_move_dist 54052 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:54	Loos2	home cage monitoring	(none)	cumulative number of long arrests, over 3 days of testing, log10 transformed [log(n)] long_arrest_num 54054 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:56	Loos2	home cage monitoring	(none)	cumulative duration of long arrests during dark phase, over 3 days of testing, log10 transformed [log(s)] long_arrest_dur_DK 54056	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:57	Loos2	home cage monitoring	(none)	long arrest, duration [s] long_arrest_dur_LT 54057	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:58	Loos2	home cage monitoring	(none)	mean duration per long arrest, over 3 days of testing, log10 transformed [log(s)] long_arrest_dur_mean 54058 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:62	Loos2	home cage monitoring	(none)	cut-off value to separate short and long arrests, over 3 days of testing, log10 transformed [log(s)] long_arrest_threshold 54062	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:63	Loos2	home cage monitoring	(none)	cumulative number of short arrests, over 3 days of testing, log10 transformed [log(n)] short_arrest_num 54063 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:65	Loos2	home cage monitoring	(none)	cumulative duration of short arrests during dark phase, over 3 days of testing [s] short_arrest_dur_DK 54065	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:66	Loos2	home cage monitoring	(none)	short arrest, duration [log(s)] short_arrest_dur_LT 54066	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:67	Loos2	home cage monitoring	(none)	mean duration per short arrest, over 3 days of testing, log10 transformed [log(s)] short_arrest_dur_mean 54067 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:71	Loos2	home cage monitoring	(none)	cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed [log(n)] long_shelter_num 54071 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:73	Loos2	home cage monitoring	(none)	cumulative duration of long shelter visits (sheltering), over 3 days of testing [s] long_shelter_dur 54073 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:75	Loos2	home cage monitoring	(none)	fraction of shelter visits (sheltering) with duration longer than long shelter visit threshold, over 3 days of testing, log10 transformed [log(ratio)] long_shelter_fraction 54075	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:76	Loos2	home cage monitoring	(none)	cut-off value to separate intermediate and long shelter visits (sheltering), over 3 days of testing [s] long_shelter_threshold 54076	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:77	Loos2	home cage monitoring	(none)	cumulative number of short shelter visits (sheltering), over 3 days of testing, log10 transformed [log(n)] short_shelter_num 54077 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:81	Loos2	home cage monitoring	(none)	cumulative duration of short shelter visits (sheltering) during dark phase, over 3 days of testing [s] short_shelter_dur_DK 54081	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:82	Loos2	home cage monitoring	(none)	short shelter visit, duration [log(s)] short_shelter_dur_LT 54082	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:83	Loos2	home cage monitoring	(none)	cut-off value to separate short and intermediate shelter visits (sheltering), over 3 days of testing [log(s)] short_shelter_threshold 54083	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:90	Loos2	home cage monitoring	(none)	mean within-strain variation in 22 principal components representing 115 spontaneous behavioral parameters within_strain_var 54401	inbred w/CC7	8	m	8-12wks		2016

Shimomura1:1	Shimomura1	monitoring system	(none)	phase angle of entrainment [hour] phase 11701	QTL population		both		N=98	2001

Shimomura1:2	Shimomura1	monitoring system	(none)	amplitude of circadian rhythmicity [hour] amp 11702	QTL population		both		N=98	2001

Shimomura1:3	Shimomura1	monitoring system	(none)	circadian activity level [hour] act 11703	QTL population		both		N=98	2001

Shimomura1:4	Shimomura1	monitoring system	(none)	degree of dissociation of activity fragments (score 0-5) slop 11704	QTL population		both		N=98	2001

Shimomura2:1	Shimomura2	monitoring system	(none)	free running period in constant darkness [h] DD_period 52701	inbred w/CC7	38	both	10wks	N=9	2015

Shimomura2:2	Shimomura2	monitoring system	(none)	amplitude of circadian rhythm in constant darkness [%] DD_amplitude 52702	inbred w/CC7	38	both	10wks	N=9	2015

Shimomura2:3	Shimomura2	monitoring system	(none)	daily activity in constant darkness (revolutions) [n] DD_activity 52703	inbred w/CC7	38	both	10wks	N=9	2015

Shimomura2:11	Shimomura2	monitoring system	(none)	percent activity in daytime under light-dark cycle [%] LD_light_activity 52711	inbred w/CC7	38	both	10wks	N=9	2015

Shimomura2:21	Shimomura2	monitoring system	(none)	phase angle of entrainment [h] phase_angle 52721	inbred w/CC7	38	both	10wks	N=8	2015

Shimomura2:31	Shimomura2	monitoring system	(none)	free running period in constant light [h] LL_period 52731	inbred w/CC7	38	both	10wks	N=8	2015

Shimomura2:32	Shimomura2	monitoring system	(none)	amplitude of circadian rhythm in constant light [%] LL_amplitude 52732	inbred w/CC7	38	both	10wks	N=8	2015

Shimomura2:33	Shimomura2	monitoring system	(none)	daily activity in constant light (revolutions) [n] LL_activity 52733	inbred w/CC7	38	both	10wks	N=8	2015

Svenson5:1	Svenson5	monitoring system	(none)	time sleeping [h] sleep_time 27501 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:5	Svenson5	monitoring system	(none)	percent time sleeping [%] pct_sleep 27505 daily light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:11	Svenson5	monitoring system	(none)	time awake/active [h] wake_time 27511 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:21	Svenson5	monitoring system	(none)	number of sleep bouts [n] sleep_bouts 27521 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:31	Svenson5	monitoring system	(none)	duration of sleep bouts [min] sleep_duration 27531 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:41	Svenson5	monitoring system	(none)	number of wakeful/active bouts [n] wake_bouts 27541 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Svenson5:51	Svenson5	monitoring system	(none)	duration of wakeful/active bouts [min] wake_duration 27551 light period dark period	B6.PWD consomic	15	both	9-11wks	N=6	2006

Zimmermann1:9	Zimmermann1	monitoring system	(none)	fine or stationary movement on x-y axis, repeated interruptions of same beam, second day (beam breaks/min) [n/min] fine_act 112172 during light during dark	inbred	30	both	7-15wks	N=11	2020

Zimmermann1:11	Zimmermann1	monitoring system	(none)	ambulatory movement on x-y axis, consecutive interruptions of different beams, second day (beam breaks/min) [n/min] amb_act 112174 during light during dark	inbred	30	both	7-15wks	N=11	2020

Zimmermann1:13	Zimmermann1	monitoring system	(none)	rearing movement, number of z-axis beam breaks, second day (beam breaks/min) [n/min] rearing_act 112176 during light during dark	inbred	30	both	7-15wks	N=11	2020

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