Project measure / variable:   Loos2   activity_dur_LT

ID, description, units MPD:54004   activity_dur_LT   cumulative duration of activity during light phase, over 3 days of testing, log10 transformed   [log(s)]  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative duration of activity during light phase, over 3 days of testing, log10 transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means3.08   log(s)
Median of the strain means3.04   log(s)
SD of the strain means± 0.275
Coefficient of variation (CV)0.0893
Min–max range of strain means2.66   –   3.56   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 23.8438 2.3844 21.6446 < 0.0001
Residuals 426 46.9283 0.1102


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2.95 0.375   59 0.0489 0.127 1.87, 3.6 -0.46
A/J m 2.71 0.47   43 0.0717 0.173 0.944, 3.72 -1.33
BALB/cByJ m 3.05 0.301   44 0.0453 0.0988 2.45, 3.52 -0.1
C3H/HeJ m 3.04 0.234   29 0.0435 0.0771 2.61, 3.91 -0.13
C57BL/6J m 3.02 0.251   107 0.0243 0.0831 2.41, 4.0 -0.21
CAST/EiJ m 3.49 0.104   14 0.0277 0.0298 3.35, 3.66 1.51
DBA/2J m 2.66 0.536   39 0.0859 0.201 1.54, 3.98 -1.52
FVB/NJ m 3.56 0.165   36 0.0275 0.0464 3.23, 3.99 1.76
NOD/ShiLtJ m 3.16 0.266   37 0.0437 0.0843 2.53, 3.7 0.3
PWK/PhJ m 3.18 0.25   15 0.0646 0.0786 2.94, 3.89 0.38
WSB/EiJ m 3.02 0.385   14 0.103 0.128 2.32, 3.83 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 2.9497 0.0432 3.0346 2.8648
A/J m 2.7134 0.0506 2.8129 2.614
BALB/cByJ m 3.0452 0.05 3.1436 2.9469
C3H/HeJ m 3.0375 0.0616 3.1586 2.9163
C57BL/6J m 3.0194 0.0321 3.0824 2.9563
CAST/EiJ m 3.4881 0.0887 3.6625 3.3138
DBA/2J m 2.6624 0.0531 2.7669 2.558
FVB/NJ m 3.5568 0.0553 3.6655 3.448
NOD/ShiLtJ m 3.1553 0.0546 3.2626 3.0481
PWK/PhJ m 3.1831 0.0857 3.3516 3.0147
WSB/EiJ m 3.0186 0.0887 3.1929 2.8442




  GWAS USING LINEAR MIXED MODELS