MPD: Phenotype measures mapped to VT:0003632, nervous system morphology trait

Phenotype measures associated with ontology term
VT:0003632 'nervous system morphology trait'

All measures in this list are mapped to the ontology descendants of VT:0003632. None are mapped to VT:0003632 directly.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Chang1:1	Chang1	electroretinography	(none)	a-wave amplitude of rod photoreceptors (ERG) [µV] rod_Awave 15701	inbred	16	both	>7wks	N=15	2008

Chang1:2	Chang1	electroretinography	(none)	b-wave amplitude of rod photoreceptors (ERG) [µV] rod_Bwave 15702	inbred	17	both	>7wks	N=15	2008

Chang1:5	Chang1	electroretinography	(none)	b-wave amplitude of cone photoreceptors (ERG) [µV] cone_Bwave 15705	inbred	16	both	>7wks	N=14	2008

Chesler3:91	Chesler3	organ weights	(none)	brain weight [g] brain_wt 43591	CC pre w/par	181	both	7-15wks	N=1	2011

Crusio1:45	Crusio1	organ weights	(none)	brain weight [g] brain_wt 62045	BXD w/par	55	both	12-16wks	N=8	2018

Crusio1:46	Crusio1	organ weights	(none)	brain weight as percentage of total body weight [%] brain_wt_pct 62046	BXD w/par	55	both	12-16wks	N=8	2018

Crusio1:48	Crusio1	histopathology	(none)	total hippocampus size (arbitrary units) hippocampus 62048 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:50	Crusio1	histopathology	(none)	size of intra- and infrapyramidal mossy fibers (arbitrary units) iipmf 62050 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:52	Crusio1	histopathology	(none)	percentage of hippocampus that is Intra- and infrapyramidal mossy fibers [%] iipmf_pct 62052 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:55	Crusio1	histopathology	(none)	size of hilus (arbitrary units) hilus 62055 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:57	Crusio1	histopathology	(none)	percentage of hippocampus that is hilus [%] hilus_pct 62057 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:60	Crusio1	histopathology	(none)	size of suprapyramidal mossy fibers (arbitrary units) supra 62060 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:62	Crusio1	histopathology	(none)	percentage of hippocampus that is suprapyramidal mossy fibers [%] supra_pct 62062 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:65	Crusio1	histopathology	(none)	size of stratum pyramidale (arbitrary units) pyr 62065 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:67	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum pyramidale [%] pyr_pct 62067 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:70	Crusio1	histopathology	(none)	size of stratum oriens (arbitrary units) oriens 62070 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:72	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum oriens [%] oriens_pct 62072 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:75	Crusio1	histopathology	(none)	size of stratum radiatum (arbitrary units) rad 62075 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:77	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum radiatum [%] rad_pct 62077 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:80	Crusio1	histopathology	(none)	size of stratum lacunosum-moleculare (arbitrary units) lacun 62080 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:82	Crusio1	histopathology	(none)	percentage of hippocampus that is stratum lacunosum-moleculare [%] lacun_pct 62082 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

JaxKOMP-EAP:295	JaxKOMP-EAP	ophthalmoscopy	(none)	optic disc optic_disc 100620 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:364	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of cone photoreceptors [µV] cone_b_amplitude cone_b_wave_amplitude 100314 left right	KOMP	351	both	16wks	N=3	2016

JaxKOMP-EAP:366	JaxKOMP-EAP	electroretinography	(none)	b-wave implicit time of rod photoreceptors (interval from onset of stimulus to peak of the wave) [ms] cone_b_time cone_b_wave_implicit_time 100316 left right	KOMP	338	both	16wks	N=3	2016

JaxKOMP-EAP:368	JaxKOMP-EAP	electroretinography	(none)	a-wave amplitude of rod photoreceptors [µV] rod_a_amplitude rod_a_wave_amplitude 100318 left right	KOMP	356	both	16wks	N=3	2016

JaxKOMP-EAP:370	JaxKOMP-EAP	electroretinography	(none)	rod a wave implicit time rod_a_time rod_a_wave_implicit_time 100320 left right	KOMP	330	both	16wks	N=3	2016

JaxKOMP-EAP:372	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of rod photoreceptors [µV] rod_b_amplitude rod_b_wave_amplitude 100322 left right	KOMP	357	both	16wks	N=3	2016

JaxKOMP-EAP:374	JaxKOMP-EAP	electroretinography	(none)	rod b wave implicit time rod_b_time rod_b_wave_implicit_time 100324 left right	KOMP	346	both	16wks	N=3	2016

JaxKOMP-LAP:268	JaxKOMP-LAP	ophthalmoscopy	(none)	optic disc optic_disc 101620 categorical	KOMP	150	both	72-79wks		2021

Jaxpheno2:1	Jaxpheno2	organ weights	(none)	brain weight [g] brain 22701 age 8wks age 16wks	inbred	11	both		N=8	2006

Jaxpheno2:3	Jaxpheno2	organ weights	(none)	brain weight as percentage of body weight [%] pct_brain 22703 age 8wks age 16wks	inbred	11	both		N=8	2006

Kas1:1	Kas1	microscopy	(none)	size, area of total ventral root [µm²] area_ventral_root 34401	inbred	6	m	22-31wks	N=4	2009

Kas1:2	Kas1	microscopy	(none)	number of axons per ventral root (calculated) [n] total_axon 34402	inbred	6	m	22-31wks	N=4	2009

Kas1:3	Kas1	microscopy	(none)	size, area of median axon [µm²] area_median_axon 34403	inbred	6	m	22-31wks	N=6	2009

Kas1:4	Kas1	microscopy	(none)	percent of 0-50 µm² axons [%] pct_axon50 34404	inbred	6	m	22-31wks	N=6	2009

Kas1:5	Kas1	microscopy	(none)	percent of 50-100 µm² axons [%] pct_axon100 34405	inbred	6	m	22-31wks	N=6	2009

Kas1:6	Kas1	microscopy	(none)	percent of 100-150 µm² axons [%] pct_axon150 34406	inbred	6	m	22-31wks	N=6	2009

Kas1:7	Kas1	microscopy	(none)	percent of 150-200 µm² axons [%] pct_axon200 34407	inbred	6	m	22-31wks	N=6	2009

Kas1:14	Kas1	microscopy	(none)	number of axons per region of interest (6000 µm²) [n] axon 34414	inbred	6	m	22-31wks	N=6	2009

Klaassen1:3	Klaassen1	histopathology	cadmium	cadmium-induced toxicity to trigeminal ganglia [designation] ganglia 16403 categorical	inbred	8	m	8wks		2001

Marchuk1:1	Marchuk1	histopathology	(none)	infarct volume following surgically-induced focal cerebral ischemia [mm³] infarct_vol 45001	inbred	16	both	11-13wks	N=4	2009

Molenhuis1:8	Molenhuis1	organ weights	(none)	brain weight [g] brain_wt 110075	CC	52	m	7-20wks	N=5	2018

Neuner1:9	Neuner1	biomarker quantification	(none)	temporal cortex amyloid level (ng/mg total protein) [ng/mg] amyloid 65909 6 mo 14 mo	F1 AD-BXD	23	both	23-57wks	N=2	2019

Reed2:31	Reed2	organ weights	(none)	brain weight [g] brain_wt 53131	B6.129 and 129.B6 consomic w/par	9	both	26wks	N=17	2015

Rhodes1:3	Rhodes1	microscopy	exercise	hippocampus: volume of dentate gyrus [mm³] DG_vol 34603 control with running wheel	inbred	12	both	15wks	N=4	2010

Rhodes1:5	Rhodes1	microscopy	exercise	hippocampus: number of new neurons in dentate gyrus [n] DG_neurons 34605 control with running wheel	inbred	12	both	15wks	N=4	2010

Rhodes1:7	Rhodes1	microscopy	exercise	hippocampus: density of new neurons in dentate gyrus [n/mm³] DG_density 34607 control with running wheel	inbred	12	both	15wks	N=4	2010

Richfield1:22	Richfield1	neurotransmitter quantification	(none)	dopamine (DA), ng per mg total protein [ratio] DA 14522	inbred	15	m	7-9wks	N=10	2003

Richfield1:25	Richfield1	neurotransmitter quantification	(none)	serotonin (5HT), ng per mg total protein [ratio] 5HT 14525	inbred	15	m	7-9wks	N=10	2003

Richfield1:26	Richfield1	neurotransmitter quantification	(none)	dopamine turnover ([DOPAC]/[DA]) [ratio] DA_turnover1 14526	inbred	15	m	7-9wks	N=10	2003

Richfield1:27	Richfield1	neurotransmitter quantification	(none)	dopamine turnover ([DOPAC] + [HVA]/[DA]) [ratio] DA_turnover2 14527	inbred	15	m	7-9wks	N=10	2003

Rosen1:1	Rosen1	histopathology	(none)	corpus callosum area [mm²] corpus_callosum 47801	BXD w/par	78	both	varies	N=2	2012

Rosen1:2	Rosen1	histopathology	(none)	corpus callosum area, adjusted [mm²] corpus_callosum_adj 47802	BXD w/par	78	both	varies	N=2	2012

Rosen2:1	Rosen2	histopathology	(none)	lateral septum volume [mm³] lateral_septum 47901	BXD w/par	71	both	varies	N=3	2012

Rosen2:2	Rosen2	histopathology	(none)	lateral septum volume, adjusted [mm³] lateral_septum_adj 47902	BXD w/par	71	both	varies	N=2	2012

Tsaih1:2	Tsaih1	organ weights	(none)	mean of the brain weight in each line mean_brain 18102	QTL population		both		N=106	2005

Wahlsten1:4	Wahlsten1	organ weights	(none)	brain weight, after fixation and trimming [g] brain_wt 10804 weight as percent of body weight	inbred	21	both	12wks	N=10	2003

Wahlsten1:6	Wahlsten1	histopathology	(none)	length of corpus callosum at mid-sagittal plane [mm] cc_length 10806	inbred	21	both	12wks	N=10	2003

Wahlsten1:7	Wahlsten1	histopathology	(none)	length of hippocampal commissure at mid-sagittal plane [mm] hc_length 10807	inbred	21	both	12wks	N=10	2003

Wahlsten1:8	Wahlsten1	histopathology	(none)	length of anterior commissure at mid-sagittal plane [mm] ac_length 10808	inbred	21	both	12wks	N=10	2003

Wahlsten1:9	Wahlsten1	histopathology	(none)	cross-sectional area of corpus callosum at midplane [mm²] cc_area 10809	inbred	21	both	12wks	N=10	2003

Wahlsten1:10	Wahlsten1	histopathology	(none)	cross-sectional area of hippocampal commissure at midplane [mm²] hc_area 10810	inbred	21	both	12wks	N=10	2003

Wahlsten1:11	Wahlsten1	histopathology	(none)	cross-sectional area of anterior commissure at midplane [mm²] ac_area 10811	inbred	21	both	12wks	N=10	2003

Wahlsten1:12	Wahlsten1	histopathology	(none)	corpus callosum index (0=absent, 1=normal, <0.65 is abnormal) [score] cc_index 10812	inbred	21	both	12wks	N=10	2003

Wahlsten1:13	Wahlsten1	histopathology	(none)	hippocampal commissure index (0=absent, 1=normal, <0.5 is abnormal) [score] hc_index 10813	inbred	21	both	12wks	N=10	2003

Wahlsten1:14	Wahlsten1	histopathology	(none)	anterior commissure index (0=absent, 1=normal, <.60 is abnormal) [score] ac_index 10814	inbred	21	both	12wks	N=10	2003

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