Project measure / variable:   Crusio1   brain_wt

ID, description, units MPD:62045   brain_wt   brain weight   [g]  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Crusio1 - brain weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested54 strains55 strains
Mean of the strain means0.40285   g 0.40425   g
Median of the strain means0.4025   g 0.406   g
SD of the strain means± 0.02041 ± 0.01894
Coefficient of variation (CV)0.0507 0.0469
Min–max range of strain means0.365   –   0.455   g 0.37167   –   0.443   g
Mean sample size per strain8.2   mice 8.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.001 0.001 1.6156 0.2041
strain 51 0.2887 0.0057 8.8698 < 0.0001
sex:strain 51 0.0398 0.0008 1.2237 0.1409
Residuals 783 0.4997 0.0006


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 0.455 0.00707107   2   0.005 0.0155 0.45, 0.46 2.56
BXD1 m 0.405 0.02121   2   0.015 0.0524 0.39, 0.42 0.04
BXD100 f 0.421 0.02726   10 0.00862168 0.0648 0.39, 0.47 0.89
BXD100 m 0.417 0.01947   10 0.0061554 0.0467 0.38, 0.44 0.67
BXD101 f 0.38833 0.02787   6 0.01138 0.0718 0.35, 0.42 -0.71
BXD101 m 0.39333 0.01366   6 0.00557773 0.0347 0.37, 0.41 -0.58
BXD102 f 0.416 0.02221   10 0.00702377 0.0534 0.37, 0.45 0.64
BXD102 m 0.4025 0.04268   8 0.01509 0.106 0.3, 0.44 -0.09
BXD11 f 0.41375 0.01847   8 0.00652947 0.0446 0.38, 0.44 0.53
BXD11 m 0.418 0.01932   10 0.0061101 0.0462 0.39, 0.46 0.73
BXD13 f 0.408 0.02098   10 0.00663325 0.0514 0.38, 0.45 0.25
BXD13 m 0.4075 0.02121   8 0.0075 0.0521 0.38, 0.44 0.17
BXD14 f 0.401 0.0137   10 0.00433333 0.0342 0.38, 0.42 -0.09
BXD14 m 0.406 0.0143   10 0.00452155 0.0352 0.39, 0.43 0.09
BXD15 f 0.419 0.01101   10 0.0034801 0.0263 0.4, 0.44 0.79
BXD15 m 0.421 0.01197   10 0.00378594 0.0284 0.4, 0.44 0.88
BXD16 f 0.443 0.02111   10 0.00667499 0.0476 0.4, 0.47 1.97
BXD16 m 0.44 0.01764   10 0.00557773 0.0401 0.4, 0.46 1.89
BXD18 f 0.405 0.02121   2   0.015 0.0524 0.39, 0.42 0.11
BXD18 m 0.38 0.02828   2   0.02 0.0744 0.36, 0.4 -1.28
BXD19 f 0.4 0.0   1   0.0 0.0 0.4, 0.4 -0.14
BXD19 m 0.43 0.0   2   0.0 0.0 0.43, 0.43 1.36
BXD2 f 0.38667 0.03841   9 0.0128 0.0993 0.3, 0.43 -0.79
BXD2 m 0.373 0.03164   10 0.01001 0.0848 0.3, 0.42 -1.65
BXD21 f 0.426 0.0135   10 0.00426875 0.0317 0.4, 0.45 1.13
BXD21 m 0.412 0.03048   10 0.00963789 0.074 0.34, 0.44 0.41
BXD27 f 0.37625 0.03662   8 0.01295 0.0973 0.34, 0.46 -1.3
BXD27 m 0.37444 0.02404   9 0.00801234 0.0642 0.33, 0.41 -1.57
BXD28 f 0.369 0.01792   10 0.00566667 0.0486 0.34, 0.39 -1.66
BXD28 m 0.378 0.02486   10 0.00785988 0.0658 0.32, 0.41 -1.39
BXD31 f 0.383 0.03561   10 0.01126 0.093 0.32, 0.43 -0.97
BXD31 m 0.395 0.0255   10 0.00806226 0.0645 0.35, 0.43 -0.49
BXD32 f 0.424 0.01955   10 0.00618241 0.0461 0.4, 0.46 1.04
BXD32 m 0.42375 0.01506   8 0.0053243 0.0355 0.4, 0.44 1.03
BXD33 f 0.4 0.0   1   0.0 0.0 0.4, 0.4 -0.14
BXD33 m 0.41 0.0   1   0.0 0.0 0.41, 0.41 0.3
BXD34 f 0.415 0.00707107   2   0.005 0.017 0.41, 0.42 0.6
BXD34 m 0.435 0.00707107   2   0.005 0.0163 0.43, 0.44 1.62
BXD39 f 0.393 0.01337   10 0.00422953 0.034 0.37, 0.41 -0.48
BXD39 m 0.393 0.01567   10 0.00495536 0.0399 0.38, 0.43 -0.59
BXD40 f 0.424 0.01713   10 0.00541603 0.0404 0.39, 0.45 1.04
BXD40 m 0.41 0.04422   10 0.01398 0.1079 0.29, 0.44 0.3
BXD42 f 0.404 0.03596   10 0.01137 0.089 0.34, 0.45 0.06
BXD42 m 0.422 0.01033   10 0.00326599 0.0245 0.41, 0.44 0.94
BXD43 f 0.389 0.02331   10 0.00737111 0.0599 0.36, 0.44 -0.68
BXD43 m 0.4 0.01333   10 0.00421637 0.0333 0.38, 0.42 -0.22
BXD44 f 0.439 0.01595   10 0.00504425 0.0363 0.42, 0.46 1.77
BXD44 m 0.418 0.01033   10 0.00326599 0.0247 0.4, 0.43 0.73
BXD48 f 0.393 0.02983   10 0.00943398 0.0759 0.35, 0.45 -0.48
BXD48 m 0.378 0.02616   10 0.00827312 0.0692 0.32, 0.41 -1.39
BXD49 f 0.418 0.01687   10 0.00533333 0.0403 0.39, 0.45 0.74
BXD49 m 0.41 0.01633   10 0.00516398 0.0398 0.39, 0.44 0.3
BXD50 f 0.365 0.0178   10 0.00562731 0.0488 0.34, 0.38 -1.86
BXD50 m 0.385 0.02461   10 0.00778175 0.0639 0.35, 0.43 -1.02
BXD51 f 0.401 0.03755   10 0.01187 0.0936 0.3, 0.44 -0.09
BXD51 m 0.423 0.01567   10 0.00495536 0.037 0.4, 0.45 0.99
BXD6 f 0.383 0.0283   10 0.00895048 0.0739 0.32, 0.41 -0.97
BXD6 m 0.377 0.03653   10 0.01155 0.0969 0.28, 0.41 -1.44
BXD61 f 0.422 0.023   10 0.00727247 0.0545 0.39, 0.47 0.94
BXD61 m 0.436 0.02011   10 0.00635959 0.0461 0.41, 0.48 1.68
BXD62 f 0.406 0.02366   10 0.00748331 0.0583 0.37, 0.45 0.15
BXD62 m 0.404 0.0143   10 0.00452155 0.0354 0.38, 0.43 -0.01
BXD65 f 0.385 0.02168   6 0.00885061 0.0563 0.35, 0.41 -0.87
BXD65 m 0.393 0.02111   10 0.00667499 0.0537 0.34, 0.41 -0.59
BXD66 f 0.395 0.01291   4 0.00645497 0.0327 0.38, 0.41 -0.38
BXD66 m 0.385 0.02517   4 0.01258 0.0654 0.35, 0.41 -1.02
BXD68 f 0.4175 0.02986   4 0.01493 0.0715 0.38, 0.45 0.72
BXD68 m 0.42 0.0395   6 0.01612 0.094 0.4, 0.5 0.83
BXD69 f 0.414 0.01647   10 0.00520683 0.0398 0.39, 0.45 0.55
BXD69 m 0.414 0.01838   10 0.00581187 0.0444 0.38, 0.44 0.51
BXD70 f 0.405 0.02991   10 0.00945751 0.0738 0.36, 0.44 0.11
BXD70 m 0.407 0.01059   10 0.00334996 0.026 0.39, 0.42 0.15
BXD71 m 0.385 0.02121   2   0.015 0.0551 0.37, 0.4 -1.02
BXD73 f 0.405 0.03866   10 0.01222 0.0955 0.36, 0.46 0.11
BXD73 m 0.415 0.02593   10 0.00819892 0.0625 0.38, 0.47 0.57
BXD75 f 0.394 0.01713   10 0.00541603 0.0435 0.36, 0.42 -0.43
BXD75 m 0.389 0.01595   10 0.00504425 0.041 0.37, 0.41 -0.81
BXD77 f 0.4 0.0216   4 0.0108 0.054 0.37, 0.42 -0.14
BXD77 m 0.41 0.0216   4 0.0108 0.0527 0.38, 0.43 0.3
BXD8 f 0.395 0.03629   10 0.01147 0.0919 0.34, 0.43 -0.38
BXD8 m 0.404 0.01776   10 0.00561743 0.044 0.37, 0.43 -0.01
BXD80 f 0.394 0.01174   10 0.00371184 0.0298 0.38, 0.41 -0.43
BXD80 m 0.412 0.0244   10 0.00771722 0.0592 0.38, 0.44 0.41
BXD81 f 0.407 0.02751   10 0.00869866 0.0676 0.37, 0.46 0.2
BXD81 m 0.414 0.03098   10 0.00979796 0.0748 0.36, 0.47 0.51
BXD84 f 0.367 0.04138   10 0.01309 0.1127 0.28, 0.39 -1.76
BXD84 m 0.394 0.02011   10 0.00635959 0.051 0.35, 0.43 -0.54
BXD85 f 0.43 0.00816497   4 0.00408248 0.019 0.42, 0.44 1.33
BXD85 m 0.43 0.01414   4 0.00707107 0.0329 0.42, 0.45 1.36
BXD86 f 0.405 0.02635   10 0.00833333 0.0651 0.38, 0.47 0.11
BXD86 m 0.422 0.023   10 0.00727247 0.0545 0.38, 0.45 0.94
BXD87 f 0.392 0.0253   10 0.008 0.0645 0.35, 0.43 -0.53
BXD87 m 0.376 0.03098   10 0.00979796 0.0824 0.32, 0.42 -1.49
BXD89 f 0.415 0.01179   10 0.00372678 0.0284 0.39, 0.43 0.6
BXD89 m 0.405 0.02014   10 0.00636832 0.0497 0.38, 0.45 0.04
BXD90 f 0.36667 0.08214   6 0.03353 0.224 0.2, 0.41 -1.77
BXD90 m 0.405 0.03886   6 0.01586 0.0959 0.34, 0.46 0.04
BXD92 f 0.425 0.02121   2   0.015 0.0499 0.41, 0.44 1.09
BXD92 m 0.41667 0.03215   3 0.01856 0.0771 0.38, 0.44 0.66
BXD96 f 0.392 0.01619   10 0.00512076 0.0413 0.36, 0.41 -0.53
BXD96 m 0.379 0.02025   10 0.00640312 0.0534 0.34, 0.4 -1.33
BXD97 f 0.376 0.01075   10 0.00339935 0.0286 0.36, 0.39 -1.32
BXD97 m 0.372 0.01932   10 0.0061101 0.0519 0.34, 0.41 -1.7
BXD98 f 0.38667 0.01633   6 0.00666667 0.0422 0.36, 0.41 -0.79
BXD98 m 0.37167 0.01722   6 0.00703167 0.0463 0.35, 0.4 -1.72
C57BL/6J f 0.43333 0.02251   6 0.00918937 0.0519 0.39, 0.45 1.49
C57BL/6J m 0.443 0.02541   10 0.00803465 0.0574 0.39, 0.48 2.05
DBA/2J f 0.367 0.04498   10 0.01422 0.1226 0.29, 0.43 -1.76
DBA/2J m 0.394 0.03307   10 0.01046 0.0839 0.36, 0.47 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 f 0.455 0.0179 0.4901 0.4199
BXD1 m 0.405 0.0179 0.4401 0.3699
BXD100 f 0.421 0.008 0.4367 0.4053
BXD100 m 0.417 0.008 0.4327 0.4013
BXD101 f 0.3883 0.0103 0.4086 0.3681
BXD101 m 0.3933 0.0103 0.4136 0.3731
BXD102 f 0.416 0.008 0.4317 0.4003
BXD102 m 0.4025 0.0089 0.42 0.385
BXD11 f 0.4138 0.0089 0.4313 0.3962
BXD11 m 0.418 0.008 0.4337 0.4023
BXD13 f 0.408 0.008 0.4237 0.3923
BXD13 m 0.4075 0.0089 0.425 0.39
BXD14 f 0.401 0.008 0.4167 0.3853
BXD14 m 0.406 0.008 0.4217 0.3903
BXD15 f 0.419 0.008 0.4347 0.4033
BXD15 m 0.421 0.008 0.4367 0.4053
BXD16 f 0.443 0.008 0.4587 0.4273
BXD16 m 0.44 0.008 0.4557 0.4243
BXD18 f 0.405 0.0179 0.4401 0.3699
BXD18 m 0.38 0.0179 0.4151 0.3449
BXD2 f 0.3867 0.0084 0.4032 0.3701
BXD2 m 0.373 0.008 0.3887 0.3573
BXD21 f 0.426 0.008 0.4417 0.4103
BXD21 m 0.412 0.008 0.4277 0.3963
BXD27 f 0.3763 0.0089 0.3938 0.3587
BXD27 m 0.3744 0.0084 0.391 0.3579
BXD28 f 0.369 0.008 0.3847 0.3533
BXD28 m 0.378 0.008 0.3937 0.3623
BXD31 f 0.383 0.008 0.3987 0.3673
BXD31 m 0.395 0.008 0.4107 0.3793
BXD32 f 0.424 0.008 0.4397 0.4083
BXD32 m 0.4238 0.0089 0.4413 0.4062
BXD34 f 0.415 0.0179 0.4501 0.3799
BXD34 m 0.435 0.0179 0.4701 0.3999
BXD39 f 0.393 0.008 0.4087 0.3773
BXD39 m 0.393 0.008 0.4087 0.3773
BXD40 f 0.424 0.008 0.4397 0.4083
BXD40 m 0.41 0.008 0.4257 0.3943
BXD42 f 0.404 0.008 0.4197 0.3883
BXD42 m 0.422 0.008 0.4377 0.4063
BXD43 f 0.389 0.008 0.4047 0.3733
BXD43 m 0.4 0.008 0.4157 0.3843
BXD44 f 0.439 0.008 0.4547 0.4233
BXD44 m 0.418 0.008 0.4337 0.4023
BXD48 f 0.393 0.008 0.4087 0.3773
BXD48 m 0.378 0.008 0.3937 0.3623
BXD49 f 0.418 0.008 0.4337 0.4023
BXD49 m 0.41 0.008 0.4257 0.3943
BXD50 f 0.365 0.008 0.3807 0.3493
BXD50 m 0.385 0.008 0.4007 0.3693
BXD51 f 0.401 0.008 0.4167 0.3853
BXD51 m 0.423 0.008 0.4387 0.4073
BXD6 f 0.383 0.008 0.3987 0.3673
BXD6 m 0.377 0.008 0.3927 0.3613
BXD61 f 0.422 0.008 0.4377 0.4063
BXD61 m 0.436 0.008 0.4517 0.4203
BXD62 f 0.406 0.008 0.4217 0.3903
BXD62 m 0.404 0.008 0.4197 0.3883
BXD65 f 0.385 0.0103 0.4052 0.3648
BXD65 m 0.393 0.008 0.4087 0.3773
BXD66 f 0.395 0.0126 0.4198 0.3702
BXD66 m 0.385 0.0126 0.4098 0.3602
BXD68 f 0.4175 0.0126 0.4423 0.3927
BXD68 m 0.42 0.0103 0.4402 0.3998
BXD69 f 0.414 0.008 0.4297 0.3983
BXD69 m 0.414 0.008 0.4297 0.3983
BXD70 f 0.405 0.008 0.4207 0.3893
BXD70 m 0.407 0.008 0.4227 0.3913
BXD73 f 0.405 0.008 0.4207 0.3893
BXD73 m 0.415 0.008 0.4307 0.3993
BXD75 f 0.394 0.008 0.4097 0.3783
BXD75 m 0.389 0.008 0.4047 0.3733
BXD77 f 0.4 0.0126 0.4248 0.3752
BXD77 m 0.41 0.0126 0.4348 0.3852
BXD8 f 0.395 0.008 0.4107 0.3793
BXD8 m 0.404 0.008 0.4197 0.3883
BXD80 f 0.394 0.008 0.4097 0.3783
BXD80 m 0.412 0.008 0.4277 0.3963
BXD81 f 0.407 0.008 0.4227 0.3913
BXD81 m 0.414 0.008 0.4297 0.3983
BXD84 f 0.367 0.008 0.3827 0.3513
BXD84 m 0.394 0.008 0.4097 0.3783
BXD85 f 0.43 0.0126 0.4548 0.4052
BXD85 m 0.43 0.0126 0.4548 0.4052
BXD86 f 0.405 0.008 0.4207 0.3893
BXD86 m 0.422 0.008 0.4377 0.4063
BXD87 f 0.392 0.008 0.4077 0.3763
BXD87 m 0.376 0.008 0.3917 0.3603
BXD89 f 0.415 0.008 0.4307 0.3993
BXD89 m 0.405 0.008 0.4207 0.3893
BXD90 f 0.3667 0.0103 0.3869 0.3464
BXD90 m 0.405 0.0103 0.4252 0.3848
BXD92 f 0.425 0.0179 0.4601 0.3899
BXD92 m 0.4167 0.0146 0.4453 0.388
BXD96 f 0.392 0.008 0.4077 0.3763
BXD96 m 0.379 0.008 0.3947 0.3633
BXD97 f 0.376 0.008 0.3917 0.3603
BXD97 m 0.372 0.008 0.3877 0.3563
BXD98 f 0.3867 0.0103 0.4069 0.3664
BXD98 m 0.3717 0.0103 0.3919 0.3514
C57BL/6J f 0.4333 0.0103 0.4536 0.4131
C57BL/6J m 0.443 0.008 0.4587 0.4273
DBA/2J f 0.367 0.008 0.3827 0.3513
DBA/2J m 0.394 0.008 0.4097 0.3783


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD1 both 0.43 0.0126 0.4548 0.4052
BXD100 both 0.419 0.0056 0.4301 0.4079
BXD101 both 0.3908 0.0073 0.4051 0.3765
BXD102 both 0.4092 0.006 0.421 0.3975
BXD11 both 0.4159 0.006 0.4276 0.4041
BXD13 both 0.4078 0.006 0.4195 0.396
BXD14 both 0.4035 0.0056 0.4146 0.3924
BXD15 both 0.42 0.0056 0.4311 0.4089
BXD16 both 0.4415 0.0056 0.4526 0.4304
BXD18 both 0.3925 0.0126 0.4173 0.3677
BXD2 both 0.3798 0.0058 0.3912 0.3684
BXD21 both 0.419 0.0056 0.4301 0.4079
BXD27 both 0.3753 0.0061 0.3874 0.3633
BXD28 both 0.3735 0.0056 0.3846 0.3624
BXD31 both 0.389 0.0056 0.4001 0.3779
BXD32 both 0.4239 0.006 0.4356 0.4121
BXD34 both 0.425 0.0126 0.4498 0.4002
BXD39 both 0.393 0.0056 0.4041 0.3819
BXD40 both 0.417 0.0056 0.4281 0.4059
BXD42 both 0.413 0.0056 0.4241 0.4019
BXD43 both 0.3945 0.0056 0.4056 0.3834
BXD44 both 0.4285 0.0056 0.4396 0.4174
BXD48 both 0.3855 0.0056 0.3966 0.3744
BXD49 both 0.414 0.0056 0.4251 0.4029
BXD50 both 0.375 0.0056 0.3861 0.3639
BXD51 both 0.412 0.0056 0.4231 0.4009
BXD6 both 0.38 0.0056 0.3911 0.3689
BXD61 both 0.429 0.0056 0.4401 0.4179
BXD62 both 0.405 0.0056 0.4161 0.3939
BXD65 both 0.389 0.0065 0.4018 0.3762
BXD66 both 0.39 0.0089 0.4075 0.3725
BXD68 both 0.4188 0.0082 0.4348 0.4027
BXD69 both 0.414 0.0056 0.4251 0.4029
BXD70 both 0.406 0.0056 0.4171 0.3949
BXD73 both 0.41 0.0056 0.4211 0.3989
BXD75 both 0.3915 0.0056 0.4026 0.3804
BXD77 both 0.405 0.0089 0.4225 0.3875
BXD8 both 0.3995 0.0056 0.4106 0.3884
BXD80 both 0.403 0.0056 0.4141 0.3919
BXD81 both 0.4105 0.0056 0.4216 0.3994
BXD84 both 0.3805 0.0056 0.3916 0.3694
BXD85 both 0.43 0.0089 0.4475 0.4125
BXD86 both 0.4135 0.0056 0.4246 0.4024
BXD87 both 0.384 0.0056 0.3951 0.3729
BXD89 both 0.41 0.0056 0.4211 0.3989
BXD90 both 0.3858 0.0073 0.4001 0.3715
BXD92 both 0.4208 0.0115 0.4435 0.3982
BXD96 both 0.3855 0.0056 0.3966 0.3744
BXD97 both 0.374 0.0056 0.3851 0.3629
BXD98 both 0.3792 0.0073 0.3935 0.3649
C57BL/6J both 0.4382 0.0065 0.451 0.4254
DBA/2J both 0.3805 0.0056 0.3916 0.3694




  GWAS USING LINEAR MIXED MODELS