MPD: Phenotype measures mapped to MA:0002889, limb segment

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Phenotype measures associated with ontology term
MA:0002889 'limb segment'

All measures in this list are mapped to the ontology descendants of MA:0002889. None are mapped to MA:0002889 directly.

MA:0000044 foot
MA:0000672 leg muscle
MA:0001356 humerus
MA:0001357 radius
MA:0001358 ulna
MA:0001359 femur
MA:0001360 fibula
MA:0001361 tibia
MA:0002714 autopod
MA:0003010 footpad

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Attie2:135	Attie2	DXA	high-fat high-sucrose diet	tibia bone mineral density (on isolated bone) after diet [g/cm²] BMD 110752	DO population		both	19-26wks	N=241	2018

Beamer1:1	Beamer1	computed tomography	(none)	femur, average bone volume (total, mid diaphysis) [g/cm³] femur_mid_cort_vol 10501	QTL population		f	20wks	N=711	1999

Beamer1:2	Beamer1	computed tomography	(none)	femur, average cortical bone volume (mid-diaphysis) [g/cm³] femur_mid_tot_vol 10502	QTL population		f	20wks	N=711	1999

Beamer2:6	Beamer2	computed tomography	(none)	femur, average bone volume (total, mid-diaphysis) [g/cm³] femur_mid_tot_vol 11206	QTL population		f	16wks	N=999	2001

Beamer2:7	Beamer2	computed tomography	(none)	femur, average cortical bone volume, mid-diaphysis [g/cm³] femur_mid_cort_vol 11207	QTL population		f	16wks	N=999	2001

Beamer2:8	Beamer2	computed tomography	(none)	femur, percentage of total volume that is cortical bone [%] femur_pct_cort 11208	QTL population		f	16wks	N=999	2001

Beamer2:9	Beamer2	computed tomography	(none)	femur, surface area to tissue volume (index) [ratio] femur_ratio 11209	QTL population		f	16wks	N=999	2001

Beamer2:10	Beamer2	computed tomography	(none)	femur, length, condyles to rostral tip of greater trochanter [mm] femur_length 11210	QTL population		f	16wks	N=999	2001

Beamer2:11	Beamer2	computed tomography	(none)	femur, average cortical thickness, mid-diaphysis [mm] femur_thickness 11211	QTL population		f	16wks	N=999	2001

Beamer2:12	Beamer2	computed tomography	(none)	femur, medial to lateral width, mid-diaphysis [mm] femur_ML 11212	QTL population		f	16wks	N=999	2001

Beamer2:13	Beamer2	computed tomography	(none)	femur, anterior to posterior width, rostral to caudal, mid-diaphysis [mm] femur_AP 11213	QTL population		f	16wks	N=999	2001

Beamer2:14	Beamer2	computed tomography	(none)	femur, ratio of medial-lateral (ML) to anterior-posterior (AP) [ratio] femur_ML_AP 11214	QTL population		f	16wks	N=999	2001

Beamer2:15	Beamer2	biomechanical test	(none)	femur, ultimate load [Ng/mL] femur_load 11215	QTL population		f	16wks	N=999	2001

Beamer2:16	Beamer2	biomechanical test	(none)	femur, energy to failure [N⋅mm] femur_energy 11216	QTL population		f	16wks	N=999	2001

Beamer2:17	Beamer2	biomechanical test	(none)	femur, stiffness [N⋅mm] femur_stiffness 11217	QTL population		f	16wks	N=999	2001

Beamer2:18	Beamer2	biomechanical test	(none)	femur, cross-sectional moment of inertia [mm⁴] femur_inertia 11218	QTL population		f	16wks	N=999	2001

Beamer2:19	Beamer2	biomechanical test	(none)	femur, ultimate stress [N] femur_stress 11219	QTL population		f	16wks	N=999	2001

Beamer2:20	Beamer2	biomechanical test	(none)	femur, elastic modulus (toughness) [N/mm²] femur_tough 11220	QTL population		f	16wks	N=999	2001

Beamer2:21	Beamer2	biomechanical test	(none)	femur, load at specimen failure (break point) [N] femur_break 11221	QTL population		f	16wks	N=999	2001

Burke1:1	Burke1	computed tomography	(none)	right femur length [mm] Femur_length 26301	QTL population		f	80wks	N=505	2012

Burke1:21	Burke1	computed tomography	(none)	right femur length [mm] Femur_length_b 26801	QTL population		f	80wks	N=832	2012

Chesler3:90	Chesler3	bone dimensions	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] bone_circumference 43590	CC pre w/par	235	both	7-15wks	N=1	2011

Donahue2:6	Donahue2	biomechanical test	(none)	maximum load on load-displacement curve [N] femur_peak_load 17206	inbred	10	both	16wks	N=10	2004

Donahue2:7	Donahue2	biomechanical test	(none)	displacement at peak load [mm] femur_peak_extension 17207	inbred	10	both	16wks	N=10	2004

Donahue2:8	Donahue2	biomechanical test	(none)	load at specimen failure (break point) [N] femur_break_load 17208	inbred	10	both	16wks	N=10	2004

Donahue2:9	Donahue2	biomechanical test	(none)	load at 95% break load [N] femur_yield_load 17209	inbred	10	both	16wks	N=10	2004

Donahue2:10	Donahue2	biomechanical test	(none)	area under load-displacement curve to break point [N⋅mm] femur_break_energy 17210	inbred	10	both	16wks	N=10	2004

Donahue2:11	Donahue2	biomechanical test	(none)	area under load-displacement curve to peak load [N/mm²] femur_peak_energy 17211	inbred	10	both	16wks	N=10	2004

Donahue2:12	Donahue2	biomechanical test	(none)	slope of force-displacement curve in linear region [N/mm] femur_stiffness 17212	inbred	10	both	16wks	N=10	2004

Donahue2:13	Donahue2	bone dimensions	(none)	length of right femur, condyles to rostral tip of greater trochanter [mm] femur_length 17213	inbred	10	both	16wks	N=10	2004

Donahue2:14	Donahue2	bone dimensions	(none)	anterior to posterior, rostral to caudal, width of right femur, mid-diaphysis [mm] femur_width_AP 17214	inbred	10	both	16wks	N=10	2004

Donahue2:15	Donahue2	bone dimensions	(none)	medial to lateral width of right femur, mid-diaphysis [mm] femur_width_ML 17215	inbred	10	both	16wks	N=10	2004

Donahue2:16	Donahue2	computed tomography	(none)	cross sectional bone area, whole thigh area minus muscle area, femoral mid-diaphysis [mm²] femur_area 17216	inbred	10	both	16wks	N=10	2004

Donahue2:17	Donahue2	computed tomography	(none)	cortical thickness of right femur, pQCT [mm] femur_thickness_R1 17217	inbred	10	both	16wks	N=10	2004

Donahue2:18	Donahue2	computed tomography	(none)	cortical thickness of right femur, µCT [mm] femur_thickness_R2 17218	inbred	10	both	16wks	N=10	2004

Donahue2:19	Donahue2	computed tomography	(none)	cortical thickness of left femur, pQCT [mm] femur_thickness_L 17219	inbred	10	both	16wks	N=10	2004

Donahue2:20	Donahue2	computed tomography	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] femur_out 17220	inbred	10	both	16wks	N=10	2004

Donahue2:21	Donahue2	computed tomography	(none)	endosteal (inner) circumference, femoral mid-diaphysis [mm] femur_in 17221	inbred	10	both	16wks	N=10	2004

Donahue2:30	Donahue2	biomechanical test	(none)	estimated elastic modulus [N/mm²] elastic_modulus 17230	inbred	10	both	16wks	N=10	2004

Donahue2:31	Donahue2	biomechanical test	(none)	estimated ultimate strength [N] ultimate_strength 17231	inbred	10	both	16wks	N=10	2004

GMC21:2	GMC21	bone dimensions	(none)	tibia length [mm] tibia_length 57002	inbred w/CC8	8	both	21wks	N=11	2018

JaxKOMP-EAP:67	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 100361 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:70	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 100364 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:79	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 100373 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:80	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 100374 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:81	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 100375 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:82	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 100376 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:83	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 100377 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:84	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 100378 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:315	JaxKOMP-EAP	X-ray	(none)	femur femur 100645 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:316	JaxKOMP-EAP	X-ray	(none)	fibula fibula 100646 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:319	JaxKOMP-EAP	X-ray	(none)	humerus humerus 100650 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:336	JaxKOMP-EAP	X-ray	(none)	radius radius 100668 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:345	JaxKOMP-EAP	X-ray	(none)	tibia tibia 100680 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:347	JaxKOMP-EAP	X-ray	(none)	ulna ulna 100683 categorical	KOMP	76	both	14wks		2017

JaxKOMP-LAP:56	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 101361 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:59	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 101364 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:68	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 101373 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:69	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 101374 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:70	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 101375 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:71	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 101376 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:72	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 101377 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:73	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 101378 categorical	KOMP	148	both	66-72wks		2021

Jaxpheno7:38	Jaxpheno7	observation (SHIRPA)	(none)	extension of opposite foot after toe pinch on horizontal wire-grid (score 0-1) [score] cross_extensor 34938	inbred	6	m	10wks	N=8	2010

Karst1:6	Karst1	organ weights	(none)	muscle mass, as the sum of 2 Musculus longissimus (ml) + 2 Musculus quadriceps (mq) [g] msclemass 26006	QTL population		both	10wks	N=166	2011

Karst1:10	Karst1	organ weights	(none)	muscle mass, log-transformed [log(g)] logmsclemass 26010	QTL population		both	10wks	N=166	2011

Karst1:11	Karst1	MRI	(none)	intramuscular fat content of the M. longissimus [%] imfml 26011	QTL population		both	10wks	N=166	2011

Karst1:12	Karst1	MRI	(none)	intramuscular fat content of the M. longissimus, log transformed [log(%)] logimfml 26012	QTL population		both	10wks	N=166	2011

Karst1:13	Karst1	MRI	(none)	Intramuscular fat content of the M. quadriceps [%] imfmq 26013	QTL population		both	10wks	N=166	2011

Karst1:14	Karst1	MRI	(none)	intramuscular fat content of the M. quadriceps, log transformed [log(%)] logimfmq 26014	QTL population		both	10wks	N=166	2011

Karst1:15	Karst1	centrifugation	(none)	drip loss in percent of the M. longissimus [%] dipml 26015	QTL population		both	10wks	N=166	2011

Karst1:16	Karst1	centrifugation	(none)	drip loss in percent of the M. longissimus, log transformed [log(%)] logdipml 26016	QTL population		both	10wks	N=166	2011

Karst1:17	Karst1	centrifugation	(none)	drip loss in percent of the M. quadriceps [%] dipmq 26017	QTL population		both	10wks	N=166	2011

Karst1:18	Karst1	centrifugation	(none)	drip loss in percent of the M. quadriceps, log transformed [log(%)] logdipmq 26018	QTL population		both	10wks	N=166	2011

Karst1:25	Karst1	metabolite quantification	(none)	glycogen content of the M. longissimus [mg/g] glyc 26025	QTL population		both	10wks	N=166	2011

Karst1:26	Karst1	metabolite quantification	(none)	glycogen content of the M. longissimus, log transformed [log(mg/g)] logglyc 26026	QTL population		both	10wks	N=166	2011

Karst1:27	Karst1	metabolite quantification	(none)	lactate content of the M. longissimus [mg/g] lac 26027	QTL population		both	10wks	N=166	2011

Karst1:28	Karst1	metabolite quantification	(none)	lactate content of the M. longissimus, log transformed [log(mg/g)] loglac 26028	QTL population		both	10wks	N=166	2011

Kumar4:11	Kumar4	gait analysis	(none)	limb duty factor, hind paws (keypoints), mean limb_duty_factor_mean 114441	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:12	Kumar4	gait analysis	(none)	limb duty factor, hind paws (keypoints), median limb_duty_factor_median 114442	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:13	Kumar4	gait analysis	(none)	limb duty factor, hind paws (keypoints), variance limb_duty_factor_var 114443	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:20	Kumar4	gait analysis	(none)	distance right hind paw keypoint travels past previous left hind paw keypoint strike, mean [cm] step_length1_mean 114450	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:21	Kumar4	gait analysis	(none)	distance right hind paw keypoint travels past previous left hind paw keypoint strike, median [cm] step_length1_median 114451	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:22	Kumar4	gait analysis	(none)	distance right hind paw keypoint travels past previous left hind paw keypoint strike, variance [cm] step_length1_var 114452	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:23	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels past the right hind paw keypoint strike, mean [cm] step_length2_mean 114453	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:24	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels past the right hind paw keypoint strike, median [cm] step_length2_median 114454	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:25	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels past the right hind paw keypoint strike, variance [cm] step_length2_var 114455	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:26	Kumar4	gait analysis	(none)	lateral distance separating hind paws (keypoints), mean [cm] step_width_mean 114456	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:27	Kumar4	gait analysis	(none)	lateral distance separating hind paws (keypoints), median [cm] step_width_median 114457	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:28	Kumar4	gait analysis	(none)	lateral distance separating hind paws (keypoints), variance [cm] step_width_variance 114458	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:29	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels for a stride, from toe-off to foot-strike, mean [cm] stride_length_mean 114459	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:30	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels for a stride, from toe-off to foot-strike, median [cm] stride_length_median 114460	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:31	Kumar4	gait analysis	(none)	distance left hind paw keypoint travels for a stride, from toe-off to foot-strike, variance [cm] stride_length_var 114461	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:32	Kumar4	gait analysis	(none)	temporal symmetry of limb duty factor of hind paws (keypoints), mean temporal_symmetry_mean 114462	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:33	Kumar4	gait analysis	(none)	temporal symmetry of limb duty factor of hind paws (keypoints), median temporal_symmetry_median 114463	inbred w/CC8	62	both	10-20wks	N=19	2021

Kumar4:34	Kumar4	gait analysis	(none)	temporal symmetry of limb duty factor of hind paws (keypoints), variance temporal_symmetry_var 114464	inbred w/CC8	62	both	10-20wks	N=19	2021

Lake2:32	Lake2	observation (SHIRPA)	(none)	extension of opposite foot after toe pinch on horizontal wire-grid (score 0-1) [score] cross_reflex 21735	B6.A consomic w/par	23	both	8wks	N=8	2005

Levy1:3	Levy1	computed tomography	(none)	femur length [mm] femur_length 54903	CC pre	31	both	8-14wks	N=3	2015

Levy1:4	Levy1	computed tomography	(none)	trabecular bone volume fraction of femur (BVTV) [%] Tb_volume 54904	CC pre	31	both	8-14wks	N=3	2015

Levy1:5	Levy1	computed tomography	(none)	trabecular bone connectivity density of femur (Conn.D) [mm^-3] Tb_connectivity 54905	CC pre	31	both	8-14wks	N=3	2015

Levy1:6	Levy1	computed tomography	(none)	trabecular bone number of femur (Tb.N) [mm^-1] Tb_number 54906	CC pre	31	both	8-14wks	N=3	2015

Levy1:7	Levy1	computed tomography	(none)	trabecular bone thickness of femur (Tb.Th) [µm] Tb_thickness 54907	CC pre	31	both	8-14wks	N=3	2015

Lionikas1:10	Lionikas1	bone dimensions	exercise	length of femur [mm] femur 48510 control exercise	inbred	6	m	11-14wks	N=15	2012

Shorter2:41	Shorter2	bone dimensions	various diets	femur length [mm] femur_length 62141 control diet high-fat cholic acid diet low-fat high-protein diet	DO population		both	12-25wks	N=140	2018

Wergedal1:2	Wergedal1	biomechanical test	(none)	maximum (ultimate) load [N] P 18902	QTL population		f	10wks	N=661	2006

Wergedal1:3	Wergedal1	DXA	(none)	cortical thickness [mm] CrtThk 18903	QTL population		f	10wks	N=661	2006

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