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Project measure / variable:   Levy1   Tb_number

ID, description, units MPD:54906   Tb_number   trabecular bone number of femur (Tb.N)   [mm-1]  
Data set, strains Levy1   CC pre   31 strains     sex: both     age: 8-14wks
Procedure computed tomography
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  STRAIN COMPARISON PLOT
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Levy1 - trabecular bone number of femur (Tb.N)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested24 strains27 strains
Mean of the strain means2.46   mm-1 3.00   mm-1
Median of the strain means2.05   mm-1 2.95   mm-1
SD of the strain means± 1.36 ± 1.11
Coefficient of variation (CV)0.554 0.370
Min–max range of strain means0.698   –   5.72   mm-1 0.418   –   5.55   mm-1
Mean sample size per strain3.0   mice 3.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.837 5.837 17.9893 0.0001
strain 16 144.7534 9.0471 27.8828 < 0.0001
sex:strain 16 30.9116 1.932 5.9543 < 0.0001
Residuals 88 28.5532 0.3245


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
PreCC1061/Tau f 2.07 0.245   2   0.173 0.118 1.89, 2.24 -0.28
PreCC111/Tau f 3.53 0.263   5 0.118 0.0745 3.25, 3.91 0.79
PreCC111/Tau m 4.03 0.235   4 0.117 0.0582 3.71, 4.27 0.93
PreCC1156/Tau m 3.34 0.0508   2   0.0359 0.0152 3.3, 3.38 0.3
PreCC1379/Tau m 4.1 0.0   1   0.0 0.0 4.1, 4.1 0.99
PreCC1452/Tau m 3.39 0.0   1   0.0 0.0 3.39, 3.39 0.35
PreCC1513/Tau f 5.72 0.356   4 0.178 0.0623 5.29, 6.11 2.4
PreCC1513/Tau m 5.55 0.551   3 0.318 0.0994 4.98, 6.08 2.29
PreCC188/Tau f 1.78 0.881   2   0.623 0.495 1.16, 2.4 -0.5
PreCC188/Tau m 1.67 0.511   7 0.193 0.306 1.05, 2.6 -1.2
PreCC1912/Tau f 3.23 0.343   2   0.243 0.106 2.99, 3.47 0.57
PreCC1912/Tau m 3.48 0.548   4 0.274 0.158 2.98, 4.01 0.43
PreCC2126/Tau f 0.738 0.72   4 0.36 0.976 0.215, 1.78 -1.26
PreCC2126/Tau m 0.418 0.179   2   0.127 0.428 0.292, 0.545 -2.33
PreCC2156/Tau f 2.2 0.205   3 0.118 0.0932 1.98, 2.38 -0.19
PreCC2156/Tau m 2.64 0.881   5 0.394 0.333 1.44, 3.68 -0.33
PreCC2391/Tau m 0.743 0.523   2   0.37 0.704 0.373, 1.11 -2.03
PreCC2438/Tau f 4.92 0.0   1   0.0 0.0 4.92, 4.92 1.81
PreCC2573/Tau m 2.85 1.5   3 0.863 0.525 1.75, 4.55 -0.14
PreCC2680/Tau f 1.67 0.126   2   0.0888 0.0754 1.58, 1.75 -0.58
PreCC2680/Tau m 1.84 0.797   5 0.356 0.434 0.58, 2.54 -1.05
PreCC2689/Tau f 1.83 0.218   4 0.109 0.119 1.59, 2.11 -0.46
PreCC2689/Tau m 2.95 0.391   2   0.277 0.133 2.67, 3.23 -0.05
PreCC2750/Tau f 0.893 0.126   2   0.0891 0.141 0.804, 0.982 -1.15
PreCC2750/Tau m 2.46 1.0   3 0.58 0.409 1.55, 3.54 -0.49
PreCC3348/Tau f 4.87 0.0   1   0.0 0.0 4.87, 4.87 1.77
PreCC3348/Tau m 3.6 0.407   6 0.166 0.113 2.88, 4.04 0.54
PreCC3438/Tau f 1.38 0.405   2   0.287 0.293 1.1, 1.67 -0.79
PreCC3438/Tau m 2.74 0.84   3 0.485 0.307 2.16, 3.7 -0.24
PreCC3480/Tau f 0.698 0.711   2   0.503 1.02 0.195, 1.2 -1.29
PreCC3480/Tau m 3.77 0.0   1   0.0 0.0 3.77, 3.77 0.69
PreCC3912/Tau f 2.99 0.381   5 0.171 0.127 2.47, 3.44 0.39
PreCC3912/Tau m 3.07 0.645   5 0.288 0.21 2.54, 4.02 0.06
PreCC4052/Tau f 1.45 0.32   7 0.121 0.22 1.03, 1.97 -0.74
PreCC4052/Tau m 4.33 0.75   5 0.336 0.173 3.46, 5.43 1.2
PreCC4141/Tau f 2.18 0.465   3 0.269 0.214 1.65, 2.54 -0.2
PreCC4141/Tau m 4.22 0.429   3 0.248 0.102 3.81, 4.67 1.1
PreCC4438/Tau f 2.04 0.171   3 0.0988 0.084 1.84, 2.16 -0.31
PreCC4457/Tau f 3.23 0.416   4 0.208 0.129 2.73, 3.72 0.57
PreCC4457/Tau m 3.58 1.13   3 0.652 0.316 2.29, 4.4 0.52
PreCC519/Tau f 4.07 0.971   4 0.485 0.239 3.22, 4.95 1.18
PreCC519/Tau m 2.48 0.313   2   0.222 0.126 2.26, 2.7 -0.47
PreCC521/Tau f 1.52 0.162   3 0.0936 0.107 1.34, 1.65 -0.69
PreCC521/Tau m 1.97 0.316   4 0.158 0.161 1.58, 2.33 -0.93
PreCC557/Tau f 1.41 0.463   4 0.231 0.328 0.836, 1.97 -0.77
PreCC611/Tau m 2.48 0.122   3 0.0703 0.0491 2.39, 2.62 -0.47
PreCC670/Tau m 4.01 0.643   3 0.371 0.16 3.53, 4.74 0.91
PreCC711/Tau f 2.63 0.0163   2   0.0116 0.0062 2.62, 2.64 0.13
PreCC711/Tau m 2.76 0.0   1   0.0 0.0 2.76, 2.76 -0.22
PreCC72/Tau f 1.91 0.225   3 0.13 0.118 1.74, 2.16 -0.4
PreCC72/Tau m 2.57 0.287   3 0.166 0.112 2.25, 2.82 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
PreCC111/Tau f 3.5288 0.2547 4.035 3.0225
PreCC111/Tau m 4.0316 0.2848 4.5976 3.4656
PreCC1513/Tau f 5.7246 0.2848 6.2906 5.1585
PreCC1513/Tau m 5.5473 0.3289 6.2009 4.8937
PreCC188/Tau f 1.7802 0.4028 2.5806 0.9797
PreCC188/Tau m 1.6712 0.2153 2.0991 1.2434
PreCC1912/Tau f 3.2291 0.4028 4.0295 2.4287
PreCC1912/Tau m 3.4768 0.2848 4.0428 2.9108
PreCC2126/Tau f 0.7382 0.2848 1.3042 0.1722
PreCC2126/Tau m 0.4182 0.4028 1.2186 0.0
PreCC2156/Tau f 2.2 0.3289 2.8536 1.5464
PreCC2156/Tau m 2.6418 0.2547 3.1481 2.1356
PreCC2680/Tau f 1.6657 0.4028 2.4661 0.8653
PreCC2680/Tau m 1.8357 0.2547 2.3419 1.3294
PreCC2689/Tau f 1.8293 0.2848 2.3953 1.2633
PreCC2689/Tau m 2.9512 0.4028 3.7516 2.1508
PreCC2750/Tau f 0.8931 0.4028 1.6935 0.0927
PreCC2750/Tau m 2.4567 0.3289 3.1103 1.8031
PreCC3438/Tau f 1.384 0.4028 2.1845 0.5836
PreCC3438/Tau m 2.7368 0.3289 3.3903 2.0832
PreCC3912/Tau f 2.9918 0.2547 3.4981 2.4856
PreCC3912/Tau m 3.0703 0.2547 3.5765 2.564
PreCC4052/Tau f 1.4542 0.2153 1.8821 1.0263
PreCC4052/Tau m 4.3254 0.2547 4.8317 3.8192
PreCC4141/Tau f 2.176 0.3289 2.8295 1.5224
PreCC4141/Tau m 4.2163 0.3289 4.8699 3.5628
PreCC4457/Tau f 3.2321 0.2848 3.7981 2.6661
PreCC4457/Tau m 3.576 0.3289 4.2296 2.9225
PreCC519/Tau f 4.07 0.2848 4.636 3.504
PreCC519/Tau m 2.481 0.4028 3.2814 1.6806
PreCC521/Tau f 1.5197 0.3289 2.1732 0.8661
PreCC521/Tau m 1.9665 0.2848 2.5325 1.4005
PreCC72/Tau f 1.907 0.3289 2.5605 1.2534
PreCC72/Tau m 2.5707 0.3289 3.2243 1.9172


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
PreCC111/Tau both 3.7802 0.1911 4.1599 3.4005
PreCC1513/Tau both 5.6359 0.2175 6.0682 5.2036
PreCC188/Tau both 1.7257 0.2284 2.1795 1.2719
PreCC1912/Tau both 3.3529 0.2467 3.8431 2.8628
PreCC2126/Tau both 0.5782 0.2467 1.0684 0.088
PreCC2156/Tau both 2.4209 0.208 2.8343 2.0076
PreCC2680/Tau both 1.7507 0.2383 2.2242 1.2771
PreCC2689/Tau both 2.3902 0.2467 2.8804 1.9001
PreCC2750/Tau both 1.6749 0.26 2.1916 1.1582
PreCC3438/Tau both 2.0604 0.26 2.5771 1.5437
PreCC3912/Tau both 3.0311 0.1801 3.389 2.6731
PreCC4052/Tau both 2.8898 0.1668 3.2212 2.5584
PreCC4141/Tau both 3.1961 0.2325 3.6583 2.734
PreCC4457/Tau both 3.4041 0.2175 3.8364 2.9718
PreCC519/Tau both 3.2755 0.2467 3.7657 2.7853
PreCC521/Tau both 1.7431 0.2175 2.1754 1.3108
PreCC72/Tau both 2.2389 0.2325 2.701 1.7767




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA