MPD: Data set: Koide3

Takahashi A, Kato K, Makino J, Shiroishi T, Koide T. Multivariate analysis of temporal descriptions of open-field behavior in wild-derived mouse strains. Behav Genet. 2006 Sep;36(5):763-74. PubMed 16402282

Koide3 downloads
• Download Koide3 project data set animal data, as uploaded
• Download Koide3 animal data matrix with factor-related expansion applied as necessary
• Download Koide3 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Koide3 measures:

MP:0001362 abnormal anxiety-related response
MP:0001392 abnormal locomotor behavior
MP:0001440 abnormal grooming behavior
MP:0001504 abnormal posture
MP:0001761 abnormal urination pattern
MP:0013189 abnormal exploration in a new environment
MP:0020147 abnormal defecation amount
VT:0001392 locomotor behavior trait
VT:0001440 grooming behavior trait
VT:0001505 body posture trait
VT:0003620 urine output
VT:0010461 excretion behavior trait
VT:0010462 defecation behavior trait
VT:0010471 exploratory behavior trait
VT:0010716 anxiety-related behavior trait

Investigators	Tsuyoshi Koide National Institute of Genetics, Mishima JAPAN Aki Takahashi National Institute of Genetics, Mishima JAPAN
Contact	Tsuyoshi Koide tkoide@lab.nig.ac.jp Lab web site
Acknowledgements	Funding provided by the Japan Society for the Promotion of Science; Grant-in-Aid from the Ministry of Education, Culture, Sports, Science and Technology This study is from the National Institute of Genetics, Japan (#2502)
Project type	Phenotype strain survey data set
MPD identifiers	Koide3 MPD:359
Data changelog	No updates/corrections. Initial release date: 02/2011.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Behavior in the open field was examined using conventional (exploratory and anxiety) indices as well as 12 discrete stereotypical behaviors such as leaning, jumping, and pausing. Most measurements count the number of 5 second intervals where a specific action occurred one or more times, during a 10 minute testing period.

Procedures conducted:

• open field test

Exploratory, anxiety-related behavior. 10 min test.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Koide3:1	Koide3	open field test	(none)	number of transitions across dividing squares of 4X4 arena, 10 min test [n] transitions 35901	wild-derived Mishima	12	both	10wks	N=10

Koide3:2	Koide3	open field test	(none)	ambulatory activity, horizontal, presence or absence of activity in 5s intervals over 10 min test [n] ambulation 35902	wild-derived Mishima	12	both	10wks	N=10

Koide3:3	Koide3	open field test	(none)	rearing activity, presence or absence of activity in 5s intervals over 10 min test [n] rearing 35903	wild-derived Mishima	12	both	10wks	N=10

Koide3:4	Koide3	open field test	(none)	leaning activity while rearing, presence or absence of activity in 5s intervals over 10 min test [n] leaning 35904	wild-derived Mishima	12	both	10wks	N=10

Koide3:5	Koide3	open field test	(none)	jumping activity, presence or absence of activity in 5s intervals over 10 min test [n] jumping 35905	wild-derived Mishima	12	both	10wks	N=10

Koide3:6	Koide3	open field test	(none)	inactivity for less than 3s, in 5s intervals over 10 min test [n] pausing 35906	wild-derived Mishima	12	both	10wks	N=10

Koide3:7	Koide3	open field test	(none)	sniffing, presence or absence of activity in 5s intervals over 10 min test [n] sniffing 35907	wild-derived Mishima	12	both	10wks	N=10

Koide3:8	Koide3	open field test	(none)	digging motion, presence or absence of activity in 5s intervals over 10 min test [n] digging 35908	wild-derived Mishima	12	both	10wks	N=10

Koide3:9	Koide3	open field test	(none)	gnawing activity, presence or absence of activity in 5s intervals over 10 min test [n] gnawing 35909	wild-derived Mishima	12	both	10wks	N=10

Koide3:10	Koide3	open field test	(none)	percentage of central ambulation (transitions in the central 4 squares of arena), 10 min test [%] pct_central_trans 35910	wild-derived Mishima	12	both	10wks	N=10

Koide3:11	Koide3	open field test	(none)	stationary state lasting more than 3s, in 5s intervals over 10 min test [n] freezing 35911	wild-derived Mishima	12	both	10wks	N=10

Koide3:12	Koide3	open field test	(none)	scrubbing face with forelimbs not followed by grooming, presence or absence of activity in 5s intervals over 10 min test [n] face_washing 35912	wild-derived Mishima	12	both	10wks	N=10

Koide3:13	Koide3	open field test	(none)	licking or scratching body or tail, presence or absence of activity in 5s intervals over 10 min test [n] grooming 35913	wild-derived Mishima	12	both	10wks	N=10

Koide3:14	Koide3	open field test	(none)	stretching body forward with stationery hindlimbs, presence or absence of activity in 5s intervals over 10 min test [n] stretch_attend 35914	wild-derived Mishima	12	both	10wks	N=10

Koide3:15	Koide3	open field test	(none)	number of fecal boli, 10 min test [n] defecation 35915	wild-derived Mishima	12	both	10wks	N=10

Koide3:16	Koide3	open field test	(none)	urine puddles (0=absence; 1=presence) 10 min test [score] urination 35916	wild-derived Mishima	12	both	10wks	N=10

Koide3: Temporal recording of open field behavior in 12 inbred strains of mice, mostly wild-derived (Mishima) strains (2006)