Project measure / variable:   Koide3   pausing

ID, description, units MPD:35906   pausing   inactivity for less than 3s, in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - inactivity for less than 3s, in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means16.4   n 16.2   n
Median of the strain means13.3   n 14.9   n
SD of the strain means± 8.00 ± 8.40
Coefficient of variation (CV)0.488 0.520
Min–max range of strain means4.50   –   29.0   n 3.30   –   28.8   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.6042 2.6042 0.0317 0.8589
strain 11 14287.6458 1298.8769 15.8095 < 0.0001
sex:strain 11 509.0458 46.2769 0.5633 0.8572
Residuals 216 17746.1 82.1579


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 9.0 5.72   10 1.81 0.635 2.0, 22.0 -0.92
BFM/2Ms m 5.7 4.03   10 1.27 0.707 1.0, 14.0 -1.25
BLG2/Ms f 13.2 9.33   10 2.95 0.707 3.0, 33.0 -0.4
BLG2/Ms m 11.4 5.34   10 1.69 0.468 4.0, 20.0 -0.57
C57BL/6J f 4.5 3.98   10 1.26 0.884 -1.48
C57BL/6J m 3.3 2.83   10 0.895 0.858 -1.53
CAST/EiJ f 12.0 7.99   10 2.53 0.666 2.0, 25.0 -0.55
CAST/EiJ m 13.7 7.69   10 2.43 0.561 6.0, 27.0 -0.29
CHD/Ms f 24.7 15.3   10 4.83 0.618 8.0, 61.0 1.04
CHD/Ms m 27.4 15.9   10 5.03 0.58 1.0, 50.0 1.34
HMI/Ms f 13.4 7.29   10 2.31 0.544 2.0, 26.0 -0.37
HMI/Ms m 17.3 9.81   10 3.1 0.567 2.0, 35.0 0.13
JF1/MsJ f 29.0 11.9   10 3.77 0.412 5.0, 47.0 1.58
JF1/MsJ m 27.4 4.65   10 1.47 0.17 22.0, 36.0 1.34
KJR/Ms f 14.6 7.75   10 2.45 0.531 4.0, 27.0 -0.22
KJR/Ms m 9.7 5.23   10 1.65 0.539 4.0, 21.0 -0.77
MSM/MsJ f 28.4 15.8   10 5.0 0.556 14.0, 55.0 1.5
MSM/MsJ m 28.8 14.3   10 4.52 0.497 10.0, 60.0 1.5
NJL/Ms f 11.1 4.53   10 1.43 0.408 6.0, 20.0 -0.66
NJL/Ms m 13.7 6.96   10 2.2 0.508 1.0, 24.0 -0.29
PGN2/Ms f 23.7 4.19   10 1.33 0.177 19.0, 29.0 0.92
PGN2/Ms m 19.5 7.43   10 2.35 0.381 11.0, 32.0 0.4
SWN/Ms f 12.9 9.67   10 3.06 0.749 1.0, 31.0 -0.43
SWN/Ms m 16.1 9.17   10 2.9 0.57 6.0, 35.0 -0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 9.0 2.8663 14.6495 3.3505
BFM/2Ms m 5.7 2.8663 11.3495 0.0505
BLG2/Ms f 13.2 2.8663 18.8495 7.5505
BLG2/Ms m 11.4 2.8663 17.0495 5.7505
C57BL/6J f 4.5 2.8663 10.1495 0.0
C57BL/6J m 3.3 2.8663 8.9495 0.0
CAST/EiJ f 12.0 2.8663 17.6495 6.3505
CAST/EiJ m 13.7 2.8663 19.3495 8.0505
CHD/Ms f 24.7 2.8663 30.3495 19.0505
CHD/Ms m 27.4 2.8663 33.0495 21.7505
HMI/Ms f 13.4 2.8663 19.0495 7.7505
HMI/Ms m 17.3 2.8663 22.9495 11.6505
JF1/MsJ f 29.0 2.8663 34.6495 23.3505
JF1/MsJ m 27.4 2.8663 33.0495 21.7505
KJR/Ms f 14.6 2.8663 20.2495 8.9505
KJR/Ms m 9.7 2.8663 15.3495 4.0505
MSM/MsJ f 28.4 2.8663 34.0495 22.7505
MSM/MsJ m 28.8 2.8663 34.4495 23.1505
NJL/Ms f 11.1 2.8663 16.7495 5.4505
NJL/Ms m 13.7 2.8663 19.3495 8.0505
PGN2/Ms f 23.7 2.8663 29.3495 18.0505
PGN2/Ms m 19.5 2.8663 25.1495 13.8505
SWN/Ms f 12.9 2.8663 18.5495 7.2505
SWN/Ms m 16.1 2.8663 21.7495 10.4505


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 7.35 2.0268 11.3448 3.3552
BLG2/Ms both 12.3 2.0268 16.2948 8.3052
C57BL/6J both 3.9 2.0268 7.8948 0.0
CAST/EiJ both 12.85 2.0268 16.8448 8.8552
CHD/Ms both 26.05 2.0268 30.0448 22.0552
HMI/Ms both 15.35 2.0268 19.3448 11.3552
JF1/MsJ both 28.2 2.0268 32.1948 24.2052
KJR/Ms both 12.15 2.0268 16.1448 8.1552
MSM/MsJ both 28.6 2.0268 32.5948 24.6052
NJL/Ms both 12.4 2.0268 16.3948 8.4052
PGN2/Ms both 21.6 2.0268 25.5948 17.6052
SWN/Ms both 14.5 2.0268 18.4948 10.5052




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA