MPD: Data set: Koide1

Koide T, Moriwaki K, Ikeda K, Niki H, Shiroishi T. Multi-phenotype behavioral characterization of inbred strains derived from wild stocks of Mus musculus. Mamm Genome. 2000 Aug;11(8):664-70. PubMed 10920237

Koide1 downloads
• Download Koide1 project data set animal data, as uploaded
• Download Koide1 animal data matrix with factor-related expansion applied as necessary
• Download Koide1 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Koide1 measures:

MP:0001362 abnormal anxiety-related response
MP:0001392 abnormal locomotor behavior
MP:0002733 abnormal thermal nociception
MP:0002798 abnormal active avoidance behavior
MP:0002799 abnormal passive avoidance behavior
MP:0013189 abnormal exploration in a new environment
VT:0001392 locomotor behavior trait
VT:0001970 pain threshold
VT:0002733 thermal nociception trait
VT:0010471 exploratory behavior trait
VT:0010532 active avoidance behavior trait
VT:0010533 passive avoidance behavior trait
VT:0010716 anxiety-related behavior trait

Investigators	Tsuyoshi Koide National Institute of Genetics, Mishima JAPAN Kazutaka Ikeda RIKEN Brain Science Institute, Wako JAPAN Kazuo Moriwaki The Graduate University for Advanced Studies, JAPAN Hiroaki Niki RIKEN Brain Science Institute, Wako JAPAN Toshihiko Shiroishi National Institute of Genetics, Mishima JAPAN
Contact	Tsuyoshi Koide tkoide@lab.nig.ac.jp Lab web site
Acknowledgements	Funding provided by Special Coordination Funds of the Science and Technology Agency; Grant-in-Aid from the Ministry of Education, Science and Culture of Japan This study is from the National Institute of Genetics, Japan (#2371)
Project type	Phenotype strain survey data set
MPD identifiers	Koide1 MPD:18
Data changelog	No updates/corrections. Initial release date: 06/2001.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Procedures conducted:

• avoidance test		Active and passive.
• home cage monitoring		Locomotor activity.
• light-dark box		Anxiety-related behavior.
• nociception assay		Hot plate and pressure on tail.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Koide1:1	Koide1	home cage monitoring	(none)	number of beam breaks, light 12h period [n] LA_LIGHT 1801	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:2	Koide1	home cage monitoring	(none)	number of beam breaks, dark 12h period [n] LA_DARK 1802	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:3	Koide1	light-dark box	(none)	time in dark box [s] LD_DARK 1803	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:4	Koide1	light-dark box	(none)	number of transitions between light and dark compartments [n] LD_TRANS 1804	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:5	Koide1	avoidance test	(none)	passive avoidance test: latency to enter box before stimulus [s] PA_BEFORE 1805	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:6	Koide1	avoidance test	(none)	passive avoidance test: latency to enter box after stimulus [s] PA_AFTER 1806	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:7	Koide1	avoidance test	(none)	passive avoidance test: learned fear response, latency to enter box next day [s] PA_LEARNED 1807	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:8	Koide1	nociception assay	(none)	tail flick test: latency to respond [s] TF 1808	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:9	Koide1	nociception assay	(none)	hot plate test: latency to respond by licking [s] HP_LICK 1809	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:10	Koide1	nociception assay	(none)	hot plate test: latency to respond by jumping [s] HP_JUMP 1810	wild-derived Mishima	11	f	8-13wks	N=10

Koide1:11	Koide1	avoidance test	(none)	active avoidance test: correct responses [%] AA 1811 day1 day2 day3 day4	wild-derived Mishima	10	f	8-13wks	N=10

Koide1: Behavior in females of 11 inbred strains of mice, mostly wild-derived (Mishima) strains (2000)