MPD: Phenotype measures mapped to VT:0002572, emotion/affect behavior trait

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Phenotype measures in JaxKOMP-EAP associated with ontology term
VT:0002572 'emotion/affect behavior trait'

All measures in this list are mapped to the ontology descendants of VT:0002572. None are mapped to VT:0002572 directly.

VT:0010459 behavioral response to novel environment trait
VT:0010716 anxiety-related behavior trait
VT:0015014 aggression-related behavior trait
VT:0015015 depression-related behavior trait

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-EAP:2	JaxKOMP-EAP	open field test	(none)	average speed in center of arena, 20 min test [cm/s] center_speed center_average_speed 100232 IMPC_OFD_017_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:3	JaxKOMP-EAP	open field test	(none)	distance traveled in center of arena, 20 min test [cm] center_distance center_distance_traveled 100233 IMPC_OFD_014_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:4	JaxKOMP-EAP	open field test	(none)	permanence time in center of arena, 20 min test [s] center_permanence center_permanence_time 100234 IMPC_OFD_016_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:6	JaxKOMP-EAP	open field test	(none)	permanence time in corners of arena, 20 min test [s] corners_permanence corners_permanence_time 100237	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:8	JaxKOMP-EAP	open field test	(none)	distance traveled, 20 min test [cm] distance distance_traveled_5min_bins 100239 IMPC_OFD_005_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:12	JaxKOMP-EAP	open field test	(none)	total distance traveled, 20 min test [cm] distance_total distance_traveled_total 100243 IMPC_OFD_020_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:13	JaxKOMP-EAP	open field test	(none)	distance traveled habituation ratio, 20 min test [ratio] distance_habituation distance_traveled_habituation_ratio 100244	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:14	JaxKOMP-EAP	open field test	(none)	distance traveled slope, 20 min test [] distance_slope distance_traveled_slope 100245	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:15	JaxKOMP-EAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 100246	KOMP	1225	both	8wks	N=9	2021

JaxKOMP-EAP:16	JaxKOMP-EAP	open field test	(none)	number of rears in 5 min bins, 20 min test [n] rears number_of_rears_5min_bins 100249 IMPC_OFD_006_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	1865	both	8wks	N=9	2021

JaxKOMP-EAP:20	JaxKOMP-EAP	open field test	(none)	total number of rears, 20 min test [n] rears_total number_of_rears_total 100253	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:21	JaxKOMP-EAP	open field test	(none)	percentage of total time in center of arena, 20 min test [%] pct_center pcttime_center 100254 IMPC_OFD_022_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:22	JaxKOMP-EAP	open field test	(none)	percentage of total time in center, habituation ratio, 20 min test [ratio] pct_center_habituation pcttime_center_habituation_ratio 100255	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:23	JaxKOMP-EAP	open field test	(none)	percentage of total time in center of arena, slope, 20 min test [] pct_center_slope pcttime_center_slope 100256	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:24	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners of arena, 20 min test [s] pct_corners pcttime_corners 100257	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:25	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners, habituation ratio, 20 min test [%] pct_corners_habituation pcttime_corners_habituation_ratio 100258	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:26	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners, slope, 20 min test [] pct_corners_slope pcttime_corners_slope 100259	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:27	JaxKOMP-EAP	open field test	(none)	average speed in periphery of arena, 20 min test [cm/s] periphery_speed periphery_average_speed 100260 IMPC_OFD_013_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:28	JaxKOMP-EAP	open field test	(none)	distance traveled in periphery of arena, 20 min test [cm] periphery_distance periphery_distance_traveled 100261 IMPC_OFD_010_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:29	JaxKOMP-EAP	open field test	(none)	permanence time in periphery of arena, 20 min test [s] periphery_permanence periphery_permanence_time 100262 IMPC_OFD_012_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:30	JaxKOMP-EAP	open field test	(none)	whole arena time spent mobile, 20 min test [s] time_mobile time_spent_mobile 100264	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:31	JaxKOMP-EAP	open field test	(none)	whole arena time spent vertical, 20 min test [s] time_vertical vertical_time 100265	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:32	JaxKOMP-EAP	open field test	(none)	whole arena average speed, 20 min test [cm/s] whole_speed whole_arena_average_speed 100266 IMPC_OFD_009_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:33	JaxKOMP-EAP	open field test	(none)	whole arena permanence time, 20 min test [s] whole_permanence whole_arena_permanence_time 100267 IMPC_OFD_008_001	KOMP	1525	both	8wks	N=8	2021

JaxKOMP-EAP:34	JaxKOMP-EAP	open field test	(none)	whole arena resting time, 20 min test [s] whole_rest whole_arena_resting_time 100268 IMPC_OFD_007_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:128	JaxKOMP-EAP	observation (SHIRPA)	(none)	transfer arousal transfer_arousal 100422 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:139	JaxKOMP-EAP	observation (SHIRPA)	(none)	aggression aggression 100433 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:142	JaxKOMP-EAP	Y-maze	(none)	latency to leave start arm [s] latency_leave_start_arm latency_to_leave_start_arm 100815	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:143	JaxKOMP-EAP	Y-maze	(none)	total arm entries [n] arm_entries total_arm_entries 100816	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:144	JaxKOMP-EAP	Y-maze	(none)	number of triads [n] triads number_of_triads 100817	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:145	JaxKOMP-EAP	Y-maze	(none)	number of spontaneous alternations [n] spontaneous_alternations number_of_spontaneous_alternations 100818	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:146	JaxKOMP-EAP	Y-maze	(none)	alternation ratio [ratio] alternation_ratio 100819	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:147	JaxKOMP-EAP	hole board test	(none)	total number of hole pokes, 20 min test [n] tot_hole_pokes total_hole_pokes 100451	KOMP	1485	both	10wks	N=8	2021

JaxKOMP-EAP:148	JaxKOMP-EAP	hole board test	(none)	number of hole pokes by individual hole number, 20 min test [n] hole_pokes_by_hole total_hole_pokes_hole_N 100452 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16	KOMP	1484	both	10wks	N=8	2021

JaxKOMP-EAP:164	JaxKOMP-EAP	light-dark box	(none)	latency to enter dark zone, 20 min test [s] reaction_time_LD reaction_time 100480	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:165	JaxKOMP-EAP	light-dark box	(none)	number of transitions between light and dark zones, 20 min test [n] transitions_LD side_changes 100481	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:166	JaxKOMP-EAP	light-dark box	(none)	time spent in light zone, 20 min test [s] light_dur_LD left_side_time_spent 100482	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:167	JaxKOMP-EAP	light-dark box	(none)	time mobile in light zone, 20 min test [s] light_mobile_LD left_side_mobile_time_spent 100483	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:168	JaxKOMP-EAP	light-dark box	(none)	time spent in dark zone, 20 min test [s] dark_dur_LD right_side_time_spent 100484	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:169	JaxKOMP-EAP	light-dark box	(none)	time mobile in dark zone, 20 min test [s] dark_mobile_LD right_side_mobile_time_spent 100485	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:170	JaxKOMP-EAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 100486	KOMP	1235	both	10wks	N=9	2021

JaxKOMP-EAP:171	JaxKOMP-EAP	light-dark box	(none)	percentage of total time in dark zone, 20 min test [%] pct_dark_LD pct_time_in_dark 100487	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:172	JaxKOMP-EAP	light-dark box	(none)	percentage of total time in light zone, 20 min test [%] pct_light_LD pct_time_in_light 100488	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:235	JaxKOMP-EAP	tail suspension test	(none)	latency to immobility, 5 min test [s] immob_latency_TS latency_to_immobility 100586	KOMP	325	both	11wks	N=10	2015

JaxKOMP-EAP:236	JaxKOMP-EAP	tail suspension test	(none)	duration of immobility, 5 min test [s] immob_duration_TS time_immobile 100587	KOMP	325	both	11wks	N=10	2015

JaxKOMP-EAP:237	JaxKOMP-EAP	tail suspension test	(none)	climbing, 5 min test (yes, no) climbing 100588 categorical	KOMP	343	both	11wks		2015

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