MPD: Phenotype measures mapped to MA:0003000, anatomical structure

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Phenotype measures in JaxCC1 associated with ontology term
MA:0003000 'anatomical structure'

All measures in this list are mapped to the ontology descendants of MA:0003000. None are mapped to MA:0003000 directly.

MA:0000009 adipose tissue
MA:0000059 blood
MA:0000072 heart
MA:0000615 forelimb muscle
MA:0000692 limb muscle
MA:0001459 bone
MA:0002443 auditory system
MA:0002501 plasma
MA:0002545 urine

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxCC1:9047	JaxCC1	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip 89047 6kHz pip 12kHz pip 18kHz pip 24kHz pip 30kHz pip	CC	18	both	15-17wks	N=3	2017

JaxCC1:9096	JaxCC1	grip strength	(none)	forelimb grip strength [g] front_paws 89096 trial1 trial2 trial3	CC	18	both	7-9wks	N=7	2017

JaxCC1:9099	JaxCC1	grip strength	(none)	forelimb grip strength [g] front_paws_summ 89099 average average normalized to bw	CC	18	both	7-9wks	N=7	2017

JaxCC1:9106	JaxCC1	grip strength	(none)	forelimb and hindlimb grip strength [g] all_paws 89106 trial1 trial2 trial3	CC	18	both	7-9wks	N=7	2017

JaxCC1:9109	JaxCC1	grip strength	(none)	forelimb and hindlimb grip strength [g] all_paws_summ 89109 average average normalized to bw	CC	18	both	7-9wks	N=7	2017

JaxCC1:9113	JaxCC1	ECG	(none)	heart rate (beats per min) [n/min] HR 89113	CC	18	both	10-12wks	N=7	2017

JaxCC1:9114	JaxCC1	ECG	(none)	heart rate variability, mean of differences between sequential beats (beats per min) [n/min] HR_V 89114	CC	18	both	10-12wks	N=7	2017

JaxCC1:9115	JaxCC1	ECG	(none)	heart rate coefficient of variation (signal intensity) [%] HR_CV 89115	CC	18	both	10-12wks	N=7	2017

JaxCC1:9116	JaxCC1	ECG	(none)	duration of RR interval [ms] RR 89116	CC	18	both	10-12wks	N=7	2017

JaxCC1:9117	JaxCC1	ECG	(none)	duration of PQ interval [ms] PQ 89117	CC	18	both	10-12wks	N=7	2017

JaxCC1:9118	JaxCC1	ECG	(none)	duration of PR interval [ms] PR 89118	CC	18	both	10-12wks	N=7	2017

JaxCC1:9119	JaxCC1	ECG	(none)	duration of QRS interval [ms] QRS 89119	CC	18	both	10-12wks	N=7	2017

JaxCC1:9120	JaxCC1	ECG	(none)	duration of QT interval [ms] QT 89120	CC	18	both	10-12wks	N=7	2017

JaxCC1:9121	JaxCC1	ECG	(none)	duration of ST interval [ms] ST 89121	CC	18	both	10-12wks	N=7	2017

JaxCC1:9122	JaxCC1	ECG	(none)	duration of QTC interval, calculated by dividing QT interval by square root of preceding RR interval [ms] QTc 89122	CC	18	both	10-12wks	N=7	2017

JaxCC1:9123	JaxCC1	ECG	(none)	QT dispersion, measured as inter-lead variability of QT intervals [ms] QT_dispersion 89123	CC	18	both	10-12wks	N=7	2017

JaxCC1:9124	JaxCC1	ECG	(none)	QTc dispersion, calculated as rate-corrected QT dispersion [ms] QTc_dispersion 89124	CC	18	both	10-12wks	N=7	2017

JaxCC1:9125	JaxCC1	ECG	(none)	mean SR amplitude, mean amplitude of signal measured from signal minimum line to peak of QRS [mV] SR_amplitude 89125	CC	18	both	10-12wks	N=7	2017

JaxCC1:9126	JaxCC1	ECG	(none)	mean R amplitude, mean amplitude of signal measured from isoelectric line to peak of QRS [mV] R_amplitude 89126	CC	18	both	10-12wks	N=7	2017

JaxCC1:9127	JaxCC1	ECG	(none)	root mean square of successive differences of neighboring RR intervals [ms] rMSSD 89127	CC	18	both	10-12wks	N=7	2017

JaxCC1:9128	JaxCC1	ECG	(none)	proportion of number of pairs of successive beat-to-beat intervals that exceed 50 ms (6>ms) [%] pNN50 89128	CC	18	both	10-12wks	N=2	2017

JaxCC1:9151	JaxCC1	urinalysis	(none)	glucose (urine GLU) [mg/dL] urine_GLU 89151	CC	14	both	12-13wks	N=5	2017

JaxCC1:9152	JaxCC1	urinalysis	(none)	magnesium level (urine Mg) [mg/dL] urine_Mg 89152	CC	13	both	12-13wks	N=5	2017

JaxCC1:9153	JaxCC1	urinalysis	(none)	creatinine (urine CREA) [mg/dL] CREA 89153	CC	14	both	12-13wks	N=5	2017

JaxCC1:9154	JaxCC1	urinalysis	(none)	microalbumin (urine MA), calculated [mg/dL] MA 89154	CC	14	both	12-13wks	N=5	2017

JaxCC1:9155	JaxCC1	urinalysis	(none)	albumin-creatinine ratio (urine ACR) [mg/g] ACR 89155	CC	14	both	12-13wks	N=5	2017

JaxCC1:9160	JaxCC1	DXA	(none)	percent fat, whole body scan, head excluded [%] pct_fat 89160	CC	18	both	13-15wks	N=7	2017

JaxCC1:9161	JaxCC1	DXA	(none)	fat tissue mass, head excluded [g] fat 89161	CC	18	both	13-15wks	N=7	2017

JaxCC1:9162	JaxCC1	DXA	(none)	fat tissue mass to body weight ratio [ratio] fat_adj 89162	CC	18	both	13-15wks	N=7	2017

JaxCC1:9169	JaxCC1	DXA	(none)	bone mineral content of whole body scan, head excluded [g] BMC 89169	CC	18	both	13-15wks	N=7	2017

JaxCC1:9170	JaxCC1	DXA	(none)	bone mineral content to body weight ratio [ratio] BMC_adj 89170	CC	18	both	13-15wks	N=7	2017

JaxCC1:9171	JaxCC1	DXA	(none)	bone mineral density of whole body scan, head excluded [g/cm²] BMD 89171	CC	18	both	13-15wks	N=7	2017

JaxCC1:9172	JaxCC1	DXA	(none)	bone area, whole body, head excluded [cm²] bone_area 89172	CC	18	both	13-15wks	N=7	2017

JaxCC1:9201	JaxCC1	hormone quantification	(none)	insulin (plasma) [pg/mL] insulin 89201	CC	18	both	17-19wks	N=6	2017

JaxCC1:9206	JaxCC1	complete blood count	(none)	red blood cell count (RBC; per volume x 10⁶) [n/µL] RBC 89206	CC	18	both	17-19wks	N=6	2017

JaxCC1:9207	JaxCC1	complete blood count	(none)	reticulocyte count (Retic; units per volume x 10⁹) [n/µL] Retic 89207	CC	18	both	17-19wks	N=6	2017

JaxCC1:9208	JaxCC1	complete blood count	(none)	reticulocyte differential (percent of total RBC) [%] pct_Retic 89208	CC	18	both	17-19wks	N=6	2017

JaxCC1:9209	JaxCC1	complete blood count	(none)	white blood cell count (WBC; units per volume x 10³) [n/µL] WBC 89209	CC	18	both	17-19wks	N=6	2017

JaxCC1:9210	JaxCC1	complete blood count	(none)	basophil differential (percent of total WBC) [%] pct_BASO 89210	CC	18	both	17-19wks	N=6	2017

JaxCC1:9211	JaxCC1	complete blood count	(none)	eosinophil differential (percent of total WBC) [%] pct_EOS 89211	CC	18	both	17-19wks	N=6	2017

JaxCC1:9212	JaxCC1	complete blood count	(none)	lymphocyte differential (percent of total WBC) [%] pct_LYM 89212	CC	18	both	17-19wks	N=6	2017

JaxCC1:9213	JaxCC1	complete blood count	(none)	monocyte differential (percent of total WBC) [%] pct_MONO 89213	CC	18	both	17-19wks	N=6	2017

JaxCC1:9214	JaxCC1	complete blood count	(none)	neutrophil differential (percent of total WBC) [%] pct_NEUT 89214	CC	18	both	17-19wks	N=6	2017

JaxCC1:9215	JaxCC1	complete blood count	(none)	large unstained cells (percent of total WBC) [%] pct_LUC 89215	CC	18	both	17-19wks	N=6	2017

JaxCC1:9219	JaxCC1	complete blood count	(none)	hematocrit (HCT) [%] HCT 89219	CC	18	both	17-19wks	N=6	2017

JaxCC1:9220	JaxCC1	complete blood count	(none)	measured hemoglobin (mHGB) [g/dL] mHGB 89220	CC	18	both	17-19wks	N=6	2017

JaxCC1:9221	JaxCC1	complete blood count	(none)	calculated hemoglobin (cHGB) [g/dL] cHGB 89221	CC	18	both	17-19wks	N=6	2017

JaxCC1:9222	JaxCC1	complete blood count	(none)	RBC corpuscular hemoglobin concentration mean (CHCM) [g/dL] CHCM 89222	CC	18	both	17-19wks	N=6	2017

JaxCC1:9223	JaxCC1	complete blood count	(none)	mean corpuscular hemoglobin (CHr) [pg] CHr 89223	CC	18	both	17-19wks	N=6	2017

JaxCC1:9224	JaxCC1	complete blood count	(none)	hemoglobin concentration distribution width (HDW) [g/dL] HDW 89224	CC	18	both	17-19wks	N=6	2017

JaxCC1:9225	JaxCC1	complete blood count	(none)	mean RBC corpuscular hemoglobin (MCH) [pg] MCH 89225	CC	18	both	17-19wks	N=6	2017

JaxCC1:9226	JaxCC1	complete blood count	(none)	mean RBC corpuscular hemoglobin concentration (MCHC) [g/dL] MCHC 89226	CC	18	both	17-19wks	N=6	2017

JaxCC1:9229	JaxCC1	complete blood count	(none)	RBC corpuscular distribution width (RDW) [%] RDW 89229	CC	18	both	17-19wks	N=6	2017

JaxCC1:9230	JaxCC1	complete blood count	(none)	mean RBC corpuscular volume (MCV) [fL] MCV 89230	CC	18	both	17-19wks	N=6	2017

JaxCC1:9231	JaxCC1	complete blood count	(none)	platelet count (PLT; units per volume x 10³) [n/µL] PLT 89231	CC	18	both	17-19wks	N=6	2017

JaxCC1:9232	JaxCC1	complete blood count	(none)	mean platelet volume (MPV) [fL] MPV 89232	CC	18	both	17-19wks	N=6	2017

JaxCC1:9237	JaxCC1	organ weights	(none)	heart weight [mg] heart_wt 89237 weight normalized to body weight	CC	18	both	17-19wks	N=6	2017

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