Project measure / variable:   Schwartz2   pctNEUT_ova72

ID, description, units MPD:9849   pctNEUT_ova72   alveolar neutrophils (percentage of total lavage cells), 72h post-challenge   [%]  OVA-sensitized  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), 72h post-challenge OVA-sensitized



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means1.62   %
Median of the strain means0.625   %
SD of the strain means± 2.00
Coefficient of variation (CV)1.24
Min–max range of strain means0   –   5.40   %
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 135.4197 19.3457 3.7601 0.0049
Residuals 30 154.35 5.145


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3.3 2.49   5 1.11 0.755 0.84
A/J m 0.0 0.0   4 0.0 0.0 -0.81
BALB/cJ m 5.4 4.04   5 1.81 0.748 1.0, 12.0 1.89
BTBR T+ Itpr3tf/J m 1.0 1.73   5 0.775 1.73 -0.31
C3H/HeJ m 0.2 0.447   5 0.2 2.24 -0.71
C57BL/6J m 2.8 3.56   5 1.59 1.27 0.59
DBA/2J m 0.0 0.0   5 0.0 0.0 -0.81
FVB/NJ m 0.25 0.5   4 0.25 2.0 -0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3.3 1.0144 5.3717 1.2283
A/J m 0.0 1.1341 2.3162 -2.3162
BALB/cJ m 5.4 1.0144 7.4717 3.3283
BTBR T+ Itpr3tf/J m 1.0 1.0144 3.0717 -1.0717
C3H/HeJ m 0.2 1.0144 2.2717 -1.8717
C57BL/6J m 2.8 1.0144 4.8717 0.7283
DBA/2J m 0.0 1.0144 2.0717 -2.0717
FVB/NJ m 0.25 1.1341 2.5662 -2.0662




  GWAS USING LINEAR MIXED MODELS