Project measure / variable:   Schwartz2   pctLYM_ova72

ID, description, units MPD:9829   pctLYM_ova72   alveolar lymphocytes (percentage of total lavage cells), 72h post-challenge   [%]  OVA-sensitized  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar lymphocytes (percentage of total lavage cells), 72h post-challenge OVA-sensitized



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means2.04   %
Median of the strain means1.80   %
SD of the strain means± 1.56
Coefficient of variation (CV)0.764
Min–max range of strain means0   –   4.60   %
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 82.4289 11.7756 2.1653 0.0666
Residuals 30 163.15 5.4383


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0 0.0   5 0.0 0.0 -1.31
A/J m 0.75 0.5   4 0.25 0.667 -0.83
BALB/cJ m 2.4 2.3   5 1.03 0.959 0.23
BTBR T+ Itpr3tf/J m 4.6 4.62   5 2.06 1.0 1.0, 11.0 1.64
C3H/HeJ m 3.4 3.21   5 1.44 0.944 1.0, 9.0 0.87
C57BL/6J m 3.0 1.22   5 0.548 0.408 1.0, 4.0 0.61
DBA/2J m 1.2 1.3   5 0.583 1.09 -0.54
FVB/NJ m 1.0 0.816   4 0.408 0.816 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 1.0429 2.1299 -2.1299
A/J m 0.75 1.166 3.1313 -1.6313
BALB/cJ m 2.4 1.0429 4.5299 0.2701
BTBR T+ Itpr3tf/J m 4.6 1.0429 6.7299 2.4701
C3H/HeJ m 3.4 1.0429 5.5299 1.2701
C57BL/6J m 3.0 1.0429 5.1299 0.8701
DBA/2J m 1.2 1.0429 3.3299 -0.9299
FVB/NJ m 1.0 1.166 3.3813 -1.3813




  GWAS USING LINEAR MIXED MODELS