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Project measure / variable:   Graham1   CD4_brain_d28

ID, description, units MPD:63332   CD4_brain_d28   percentage of CD3+ T cells that are CD4+ in brain, post infection   [%]  day 28  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in brain, post infection day 28



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means37.647   %
Median of the strain means29.833   %
SD of the strain means± 15.84
Coefficient of variation (CV)0.4207
Min–max range of strain means24.1   –   58.37   %
Mean sample size per strain2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 2 1940.6956 970.3478 8.4999 0.0178
Residuals 6 684.96 114.16


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 29.833 16.097   3 9.2934 0.5396 19.8, 48.4 -0.49
RIX:CC(005 x 001) m 24.1 0.0   1   0.0 0.0 24.1, 24.1 -0.86
RIX:CC(017 x 004) m 58.37 8.4097   3 4.8554 0.1441 50.2, 67.0 1.31
RIX:CC(024 x 023) m 50.8 0.0   1   0.0 0.0 50.8, 50.8 0.83
RIX:CC(041 x 012) m 25.133 3.5572   3 2.0537 0.1415 22.0, 29.0 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 29.8333 6.1687 44.9277 14.739
RIX:CC(017 x 004) m 58.3667 6.1687 73.461 43.2723
RIX:CC(041 x 012) m 25.1333 6.1687 40.2277 10.039




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA