Project measure / variable:   Graham1   CD4_brain_d12

ID, description, units MPD:63330   CD4_brain_d12   percentage of CD3+ T cells that are CD4+ in brain, post infection   [%]  day 12  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in brain, post infection day 12



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means32.917   %
Median of the strain means30.1   %
SD of the strain means± 9.4481
Coefficient of variation (CV)0.287
Min–max range of strain means23.9   –   43.667   %
Mean sample size per strain2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 955.5635 318.5212 2.5445 0.1394
Residuals 7 876.2783 125.1826


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 43.667 13.414   3 7.7447 0.3072 28.9, 55.1 1.14
RIX:CC(005 x 001) m 24.75 5.3033   2   3.75 0.2143 21.0, 28.5 -0.86
RIX:CC(017 x 004) m 23.9 12.201   3 7.0444 0.5105 11.8, 36.2 -0.95
RIX:CC(024 x 023) m 30.1 0.0   1   0.0 0.0 30.1, 30.1 -0.3
RIX:CC(041 x 012) m 42.167 9.7603   3 5.6351 0.2315 31.2, 49.9 0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 43.6667 6.4597 58.9414 28.3919
RIX:CC(005 x 001) m 24.75 7.9115 43.4576 6.0424
RIX:CC(017 x 004) m 23.9 6.4597 39.1747 8.6253
RIX:CC(041 x 012) m 42.1667 6.4597 57.4414 26.8919




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA