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Project measure / variable:   Graham1   clin_score_d10

ID, description, units MPD:63320   clin_score_d10   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 10  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 10



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.33651   score
Median of the strain means0.0   score
SD of the strain means± 0.49872
Coefficient of variation (CV)1.4821
Min–max range of strain means0.0   –   1.1111   score
Mean sample size per strain8.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 8.8387 2.2097 18.2412 < 0.0001
Residuals 38 4.6032 0.1211


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 0.0 0.0   9 0.0 None -0.67
RIX:CC(005 x 001) m 0.57143 0.53452   7 0.20203 0.9354 0.47
RIX:CC(017 x 004) m 0.0 0.0   9 0.0 None -0.67
RIX:CC(024 x 023) m 1.1111 0.60093   9 0.20031 0.5408 1.55
RIX:CC(041 x 012) m 0.0 0.0   9 0.0 None -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.116 0.2349 -0.2349
RIX:CC(005 x 001) m 0.5714 0.1315 0.8377 0.3051
RIX:CC(017 x 004) m 0.0 0.116 0.2349 -0.2349
RIX:CC(024 x 023) m 1.1111 0.116 1.346 0.8763
RIX:CC(041 x 012) m 0.0 0.116 0.2349 -0.2349




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA