Project measure / variable:   Graham1   clin_score_d9

ID, description, units MPD:63319   clin_score_d9   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 9  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 9



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.27778   score
Median of the strain means0.0   score
SD of the strain means± 0.40445
Coefficient of variation (CV)1.456
Min–max range of strain means0.0   –   0.88889   score
Mean sample size per strain8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 5.8384 1.4596 6.404 0.0005
Residuals 39 8.8889 0.2279


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 0.0 0.0   9 0.0 None -0.69
RIX:CC(005 x 001) m 0.5 1.069   8 0.37796 2.1381 0.55
RIX:CC(017 x 004) m 0.0 0.0   9 0.0 None -0.69
RIX:CC(024 x 023) m 0.88889 0.33333   9 0.11111 0.375 1.51
RIX:CC(041 x 012) m 0.0 0.0   9 0.0 None -0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.1591 0.3219 -0.3219
RIX:CC(005 x 001) m 0.5 0.1688 0.8414 0.1586
RIX:CC(017 x 004) m 0.0 0.1591 0.3219 -0.3219
RIX:CC(024 x 023) m 0.8889 0.1591 1.2108 0.567
RIX:CC(041 x 012) m 0.0 0.1591 0.3219 -0.3219




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA