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Project measure / variable:   CSNA02   bw_d2

ID, description, units MPD:62221   bw_d2   body weight for ethanol study   [g]  day 2  
Data set, strains CSNA02   inbred   18 strains     sex: both     age: 16-39wks
Procedure body weight
Ontology mappings


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  STRAIN COMPARISON PLOT
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CSNA02 - body weight for ethanol study day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means23.421   g 27.835   g
Median of the strain means23.767   g 27.373   g
SD of the strain means± 4.995 ± 6.1163
Coefficient of variation (CV)0.2133 0.2197
Min–max range of strain means15.05   –   38.267   g 18.9   –   45.044   g
Mean sample size per strain5.4   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 923.3274 923.3274 204.5381 < 0.0001
strain 16 8338.4484 521.153 115.4473 < 0.0001
sex:strain 16 161.7085 10.1068 2.2389 0.0059
Residuals 163 735.8158 4.5142


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.325 2.1665   8 0.76596 0.0929 20.0, 26.2 -0.02
129S1/SvImJ m 26.333 1.4976   6 0.61137 0.0569 24.1, 27.8 -0.25
A/J f 21.933 1.4629   9 0.48762 0.0667 20.1, 24.2 -0.3
A/J m 25.444 1.3593   9 0.45311 0.0534 23.5, 27.8 -0.39
C57BL/6J f 23.7 1.5856   8 0.56061 0.0669 21.3, 26.5 0.06
C57BL/6J m 28.414 2.0667   7 0.78116 0.0727 26.3, 31.7 0.09
CAST/EiJ f 15.05 0.87994   8 0.3111 0.0585 13.8, 16.4 -1.68
CAST/EiJ m 18.9 0.99427   8 0.35153 0.0526 16.8, 19.9 -1.46
CC002/UncJ f 26.2 0.45826   3 0.26458 0.0175 25.8, 26.7 0.56
CC002/UncJ m 30.4 1.7349   3 1.0017 0.0571 28.4, 31.5 0.42
CC004/TauUncJ f 25.24 0.83845   5 0.37497 0.0332 24.2, 26.5 0.36
CC004/TauUncJ m 31.356 2.8439   9 0.94797 0.0907 26.1, 35.2 0.58
CC006/TauUncJ f 24.067 0.55076   3 0.31798 0.0229 23.7, 24.7 0.13
CC006/TauUncJ m 23.667 4.0808   3 2.3561 0.1724 19.2, 27.2 -0.68
CC011/UncJ f 26.05 2.3335   2   1.65 0.0896 24.4, 27.7 0.53
CC011/UncJ m 30.65 0.21213   2   0.15 0.0069 30.5, 30.8 0.46
CC012/GeniUncJ f 21.467 1.7616   3 1.0171 0.0821 20.4, 23.5 -0.39
CC012/GeniUncJ m 24.867 0.45092   3 0.26034 0.0181 24.4, 25.3 -0.49
CC025/GeniUncJ f 19.9 0.0   1   0.0 0.0 19.9, 19.9 -0.71
CC025/GeniUncJ m 26.3 0.0   1   0.0 0.0 26.3, 26.3 -0.25
CC028/GeniUncJ f 24.6 1.3528   3 0.78102 0.055 23.2, 25.9 0.24
CC028/GeniUncJ m 31.5 3.995   3 2.3065 0.1268 28.9, 36.1 0.6
CC032/GeniUncJ f 23.833 0.46188   3 0.26667 0.0194 23.3, 24.1 0.08
CC032/GeniUncJ m 30.567 2.9092   3 1.6796 0.0952 27.8, 33.6 0.45
CC041/TauUncJ f 26.567 2.3558   9 0.78528 0.0887 22.1, 30.9 0.63
CC041/TauUncJ m 32.778 3.5443   9 1.1814 0.1081 29.3, 39.1 0.81
CC061/GeniUncJ f 21.4 0.42426   2   0.3 0.0198 21.1, 21.7 -0.4
CC061/GeniUncJ m 26.067 0.92916   3 0.53645 0.0356 25.3, 27.1 -0.29
NOD/ShiLtJ f 25.5 3.0489   6 1.2447 0.1196 20.7, 28.6 0.42
NOD/ShiLtJ m 29.983 1.8346   6 0.74896 0.0612 27.2, 32.5 0.35
NZO/HlLtJ f 38.267 3.0488   9 1.0163 0.0797 33.7, 42.0 2.97
NZO/HlLtJ m 45.044 3.359   9 1.1197 0.0746 40.8, 53.0 2.81
PWK/PhJ f 16.688 1.142   8 0.40375 0.0684 15.1, 18.8 -1.35
PWK/PhJ m 19.644 1.3767   9 0.4589 0.0701 17.8, 21.7 -1.34
WSB/EiJ f 17.8 1.6878   8 0.59672 0.0948 15.5, 20.8 -1.13
WSB/EiJ m 19.113 1.3314   8 0.47073 0.0697 17.2, 20.6 -1.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.325 0.7512 24.8083 21.8417
129S1/SvImJ m 26.3333 0.8674 28.0461 24.6206
A/J f 21.9333 0.7082 23.3318 20.5349
A/J m 25.4444 0.7082 26.8429 24.046
C57BL/6J f 23.7 0.7512 25.1833 22.2167
C57BL/6J m 28.4143 0.803 30.0 26.8286
CAST/EiJ f 15.05 0.7512 16.5333 13.5667
CAST/EiJ m 18.9 0.7512 20.3833 17.4167
CC002/UncJ f 26.2 1.2267 28.6222 23.7778
CC002/UncJ m 30.4 1.2267 32.8222 27.9778
CC004/TauUncJ f 25.24 0.9502 27.1162 23.3638
CC004/TauUncJ m 31.3556 0.7082 32.754 29.9571
CC006/TauUncJ f 24.0667 1.2267 26.4889 21.6444
CC006/TauUncJ m 23.6667 1.2267 26.0889 21.2444
CC011/UncJ f 26.05 1.5024 29.0166 23.0834
CC011/UncJ m 30.65 1.5024 33.6166 27.6834
CC012/GeniUncJ f 21.4667 1.2267 23.8889 19.0444
CC012/GeniUncJ m 24.8667 1.2267 27.2889 22.4444
CC028/GeniUncJ f 24.6 1.2267 27.0222 22.1778
CC028/GeniUncJ m 31.5 1.2267 33.9222 29.0778
CC032/GeniUncJ f 23.8333 1.2267 26.2556 21.4111
CC032/GeniUncJ m 30.5667 1.2267 32.9889 28.1444
CC041/TauUncJ f 26.5667 0.7082 27.9651 25.1682
CC041/TauUncJ m 32.7778 0.7082 34.1763 31.3793
CC061/GeniUncJ f 21.4 1.5024 24.3666 18.4334
CC061/GeniUncJ m 26.0667 1.2267 28.4889 23.6444
NOD/ShiLtJ f 25.5 0.8674 27.2128 23.7872
NOD/ShiLtJ m 29.9833 0.8674 31.6961 28.2706
NZO/HlLtJ f 38.2667 0.7082 39.6651 36.8682
NZO/HlLtJ m 45.0444 0.7082 46.4429 43.646
PWK/PhJ f 16.6875 0.7512 18.1708 15.2042
PWK/PhJ m 19.6444 0.7082 21.0429 18.246
WSB/EiJ f 17.8 0.7512 19.2833 16.3167
WSB/EiJ m 19.1125 0.7512 20.5958 17.6292


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.8292 0.5737 25.9621 23.6963
A/J both 23.6889 0.5008 24.6778 22.7
C57BL/6J both 26.0571 0.5498 27.1428 24.9715
CAST/EiJ both 16.975 0.5312 18.0239 15.9261
CC002/UncJ both 28.3 0.8674 30.0128 26.5872
CC004/TauUncJ both 28.2978 0.5925 29.4678 27.1277
CC006/TauUncJ both 23.8667 0.8674 25.5794 22.1539
CC011/UncJ both 28.35 1.0623 30.4477 26.2523
CC012/GeniUncJ both 23.1667 0.8674 24.8794 21.4539
CC028/GeniUncJ both 28.05 0.8674 29.7628 26.3372
CC032/GeniUncJ both 27.2 0.8674 28.9128 25.4872
CC041/TauUncJ both 29.6722 0.5008 30.6611 28.6834
CC061/GeniUncJ both 23.7333 0.9698 25.6483 21.8184
NOD/ShiLtJ both 27.7417 0.6133 28.9528 26.5306
NZO/HlLtJ both 41.6556 0.5008 42.6444 40.6667
PWK/PhJ both 18.166 0.5162 19.1853 17.1467
WSB/EiJ both 18.4563 0.5312 19.5051 17.4074




  GWAS USING LINEAR MIXED MODELS