Project measure / variable:   CSNA02   locomotor_diff

ID, description, units MPD:62203   locomotor_diff   distance traveled, 40 min test   [cm]  day 2 minus day 1  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA02 - distance traveled, 40 min test day 2 minus day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means-496.0   cm -699.5   cm
Median of the strain means-233.0   cm -596.2   cm
SD of the strain means± 979.4 ± 622.8
Coefficient of variation (CV)-1.9746 -0.8904
Min–max range of strain means-2246.0   –   731.1   cm -1942.0   –   24.132   cm
Mean sample size per strain8.3   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2665370.1947 2665370.1947 1.3948 0.2395
strain 9 67322192.1843 7480243.576 3.9144 0.0002
sex:strain 9 33748495.7393 3749832.8599 1.9623 0.0477
Residuals 146 278997142.6958 1910939.3335


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 452.0 1043.0   9 347.6 2.3069 -619.27, 2733.7 0.97
129S1/SvImJ m -518.4 902.5   9 300.8 -1.7409 -1998.46, 514.6 0.29
A/J f 99.87 520.8   9 173.6 5.215 -855.3, 837.42 0.61
A/J m -183.2 463.6   9 154.5 -2.5302 -1261.48, 272.91 0.83
C57BL/6J f -2246.0 1676.0   9 558.8 -0.7463 -5078.0, 394.92 -1.79
C57BL/6J m -1065.0 1009.0   9 336.2 -0.9468 -2903.4, 237.77 -0.59
CAST/EiJ f -341.8 764.2   9 254.7 -2.2362 -2158.14, 497.2 0.16
CAST/EiJ m -1388.0 1582.0   9 527.5 -1.1399 -3575.8, 444.85 -1.11
CC004/TauUncJ f -1505.0 1603.0   5 716.7 -1.0645 -3685.73, 374.58 -1.03
CC004/TauUncJ m -310.1 1138.0   6 464.7 -3.6704 -1464.48, 1740.55 0.63
CC041/TauUncJ f 31.567 506.5   6 206.8 16.0443 -796.52, 688.0 0.54
CC041/TauUncJ m -109.9 787.7   6 321.6 -7.1683 -1107.8, 1201.6 0.95
NOD/ShiLtJ f -402.4 2577.0   9 859.0 -6.4044 -5779.1, 3158.01 0.1
NOD/ShiLtJ m -1942.0 2969.0   8 1050.0 -1.5289 -6132.94, 3440.59 -2.0
NZO/HlLtJ f -124.2 459.0   9 153.0 -3.696 -893.41, 577.62 0.38
NZO/HlLtJ m -674.1 439.6   9 146.5 -0.6521 -1416.39, -195.78 0.04
PWK/PhJ f 731.1 1679.0   9 559.5 2.2958 -1400.32, 4191.12 1.25
PWK/PhJ m 24.132 1005.0   9 335.1 41.6574 -1229.36, 1551.41 1.16
WSB/EiJ f -1655.0 1506.0   9 502.1 -0.9099 -4107.7, 39.0 -1.18
WSB/EiJ m -828.2 1441.0   9 480.2 -1.7395 -3664.59, 1039.27 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 452.0267 460.7891 1362.7052 -458.6519
129S1/SvImJ m -518.4467 460.7891 392.2319 -1429.1252
A/J f 99.8722 460.7891 1010.5508 -810.8063
A/J m -183.2467 460.7891 727.4319 -1093.9252
C57BL/6J f -2246.0056 460.7891 -1335.327 -3156.6841
C57BL/6J m -1065.1256 460.7891 -154.447 -1975.8041
CAST/EiJ f -341.7544 460.7891 568.9241 -1252.433
CAST/EiJ m -1388.2656 460.7891 -477.587 -2298.9441
CC004/TauUncJ f -1505.462 618.2134 -283.6585 -2727.2655
CC004/TauUncJ m -310.1067 564.3491 805.2422 -1425.4555
CC041/TauUncJ f 31.5667 564.3491 1146.9155 -1083.7822
CC041/TauUncJ m -109.8867 564.3491 1005.4622 -1225.2355
NOD/ShiLtJ f -402.3656 460.7891 508.313 -1313.0441
NOD/ShiLtJ m -1941.79 488.7406 -975.8696 -2907.7104
NZO/HlLtJ f -124.1967 460.7891 786.4819 -1034.8752
NZO/HlLtJ m -674.0878 460.7891 236.5908 -1584.7663
PWK/PhJ f 731.13 460.7891 1641.8085 -179.5485
PWK/PhJ m 24.1322 460.7891 934.8108 -886.5463
WSB/EiJ f -1655.4878 460.7891 -744.8092 -2566.1663
WSB/EiJ m -828.2033 460.7891 82.4752 -1738.8819


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both -33.21 325.8271 610.737 -677.157
A/J both -41.6872 325.8271 602.2597 -685.6342
C57BL/6J both -1655.5656 325.8271 -1011.6186 -2299.5125
CAST/EiJ both -865.01 325.8271 -221.063 -1508.957
CC004/TauUncJ both -907.7843 418.5325 -80.6195 -1734.9492
CC041/TauUncJ both -39.16 399.0551 749.5107 -827.8307
NOD/ShiLtJ both -1172.0778 335.8549 -508.3124 -1835.8431
NZO/HlLtJ both -399.1422 325.8271 244.8047 -1043.0892
PWK/PhJ both 377.6311 325.8271 1021.5781 -266.3159
WSB/EiJ both -1241.8456 325.8271 -597.8986 -1885.7925




  GWAS USING LINEAR MIXED MODELS