Project measure / variable:   GMC14   eye_length_L

ID, description, units MPD:56321   eye_length_L   eye axial length   [mm]  left eye  
Data set, strains GMC14   inbred w/CC8   8 strains     sex: both     age: 15-16wks
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  STRAIN COMPARISON PLOT
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GMC14 - eye axial length left eye



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means3.50   mm 3.54   mm
Median of the strain means3.50   mm 3.54   mm
SD of the strain means± 0.128 ± 0.123
Coefficient of variation (CV)0.0365 0.0349
Min–max range of strain means3.28   –   3.70   mm 3.38   –   3.73   mm
Mean sample size per strain13.0   mice 12.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1682 0.1682 33.7635 < 0.0001
strain 7 2.9558 0.4223 84.7605 < 0.0001
sex:strain 7 0.0695 0.0099 1.9929 0.0581
Residuals 186 0.9266 0.005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.51 0.0327   15 0.00844 0.00931 3.47, 3.57 0.04
129S1/SvImJ m 3.53 0.0387   16 0.00967 0.011 3.45, 3.6 -0.08
A/J f 3.53 0.0622   14 0.0166 0.0176 3.4, 3.65 0.2
A/J m 3.56 0.0422   16 0.0105 0.0119 3.49, 3.63 0.16
C57BL/6J f 3.5 0.165   15 0.0427 0.0473 3.1, 3.61 -0.04
C57BL/6J m 3.59 0.0386   16 0.00964 0.0107 3.48, 3.64 0.41
CAST/EiJ f 3.28 0.12   19 0.0274 0.0365 3.08, 3.4 -1.76
CAST/EiJ m 3.38 0.0464   13 0.0129 0.0137 3.28, 3.45 -1.3
NOD/ShiLtJ f 3.7 0.0598   17 0.0145 0.0162 3.61, 3.81 1.52
NOD/ShiLtJ m 3.73 0.048   14 0.0128 0.0129 3.67, 3.82 1.54
NZO/HlLtJ f 3.63 0.0278   16 0.00695 0.00765 3.56, 3.67 0.98
NZO/HlLtJ m 3.67 0.0264   17 0.0064 0.00719 3.62, 3.71 1.05
PWK/PhJ f 3.41 0.0311   4 0.0155 0.00912 3.37, 3.44 -0.74
PWK/PhJ m 3.41 0.0   2   0.0 0.0 3.41, 3.41 -1.05
WSB/EiJ f 3.48 0.0347   4 0.0173 0.00995 3.46, 3.53 -0.2
WSB/EiJ m 3.45 0.048   4 0.024 0.0139 3.41, 3.52 -0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.5105 0.0182 3.5464 3.4745
129S1/SvImJ m 3.5281 0.0176 3.5629 3.4933
A/J f 3.5289 0.0189 3.5661 3.4917
A/J m 3.5583 0.0176 3.5931 3.5235
C57BL/6J f 3.4967 0.0182 3.5326 3.4607
C57BL/6J m 3.5885 0.0176 3.6233 3.5537
CAST/EiJ f 3.2769 0.0162 3.3089 3.245
CAST/EiJ m 3.3815 0.0196 3.4201 3.3428
NOD/ShiLtJ f 3.6955 0.0171 3.7292 3.6617
NOD/ShiLtJ m 3.7263 0.0189 3.7635 3.6891
NZO/HlLtJ f 3.6343 0.0176 3.6691 3.5994
NZO/HlLtJ m 3.6671 0.0171 3.7009 3.6333
PWK/PhJ f 3.4053 0.0353 3.4749 3.3356
PWK/PhJ m 3.413 0.0499 3.5115 3.3145
WSB/EiJ f 3.4848 0.0353 3.5544 3.4151
WSB/EiJ m 3.449 0.0353 3.5186 3.3794


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.5193 0.0127 3.5443 3.4942
A/J both 3.5436 0.0129 3.5691 3.5181
C57BL/6J both 3.5426 0.0127 3.5676 3.5176
CAST/EiJ both 3.3292 0.0127 3.3543 3.3041
NOD/ShiLtJ both 3.7109 0.0127 3.736 3.6858
NZO/HlLtJ both 3.6507 0.0123 3.6749 3.6264
PWK/PhJ both 3.4091 0.0306 3.4694 3.3488
WSB/EiJ both 3.4669 0.025 3.5161 3.4176




  GWAS USING LINEAR MIXED MODELS