Project measure / variable:   GMC09   distance_mean

ID, description, units MPD:55857   distance_mean   mean distance traveled, 21 h test, 15 min bins   [cm]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean distance traveled, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means5834   cm 4878   cm
Median of the strain means6194   cm 4570   cm
SD of the strain means± 1956 ± 2150
Coefficient of variation (CV)0.335 0.441
Min–max range of strain means3048   –   8517   cm 2191   –   8775   cm
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 63113483.861 63113483.861 4.7386 0.0304
strain 7 831668983.7907 118809854.8272 8.9204 < 0.0001
sex:strain 7 209064604.5609 29866372.0801 2.2424 0.0314
Residuals 255 3396315812.0066 13318885.5373


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3048.0 2001.0   16 500.0 0.656 1322.0, 9197.0 -1.42
129S1/SvImJ m 2191.0 1302.0   16 325.0 0.594 720.0, 5927.0 -1.25
A/J f 4112.0 972.0   16 243.0 0.236 3129.0, 7226.0 -0.88
A/J m 3712.0 1326.0   16 331.0 0.357 2346.0, 7984.0 -0.54
C57BL/6J f 6107.0 2157.0   16 539.0 0.353 3486.0, 10539.0 0.14
C57BL/6J m 4326.0 1009.0   16 252.0 0.233 3120.0, 6987.0 -0.26
CAST/EiJ f 8088.0 5373.0   19 1233.0 0.664 3622.0, 26608.0 1.15
CAST/EiJ m 6023.0 1573.0   14 420.0 0.261 4308.0, 10461.0 0.53
NOD/ShiLtJ f 8517.0 5110.0   18 1204.0 0.6 3879.0, 19457.0 1.37
NOD/ShiLtJ m 4813.0 1114.0   16 278.0 0.231 2614.0, 6728.0 -0.03
NZO/HlLtJ f 4068.0 3406.0   17 826.0 0.837 1164.0, 12671.0 -0.9
NZO/HlLtJ m 2750.0 2225.0   17 540.0 0.809 1162.0, 10706.0 -0.99
PWK/PhJ f 6282.0 3153.0   20 705.0 0.502 3253.0, 18538.0 0.23
PWK/PhJ m 8775.0 8010.0   20 1791.0 0.913 3128.0, 33748.0 1.81
WSB/EiJ f 6449.0 2466.0   18 581.0 0.382 3541.0, 13291.0 0.31
WSB/EiJ m 6437.0 5130.0   16 1283.0 0.797 2876.0, 23541.0 0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3048.1062 912.3762 4844.8584 1251.3541
129S1/SvImJ m 2190.675 912.3762 3987.4271 393.9229
A/J f 4112.0875 912.3762 5908.8396 2315.3354
A/J m 3712.35 912.3762 5509.1021 1915.5979
C57BL/6J f 6107.1875 912.3762 7903.9396 4310.4354
C57BL/6J m 4325.8125 912.3762 6122.5646 2529.0604
CAST/EiJ f 8087.5421 837.2538 9736.3549 6438.7293
CAST/EiJ m 6022.5857 975.3712 7943.3945 4101.7769
NOD/ShiLtJ f 8516.9 860.1965 10210.8941 6822.9059
NOD/ShiLtJ m 4812.6125 912.3762 6609.3646 3015.8604
NZO/HlLtJ f 4067.5 885.1349 5810.6056 2324.3944
NZO/HlLtJ m 2750.2353 885.1349 4493.3409 1007.1297
PWK/PhJ f 6281.55 816.0541 7888.6139 4674.4861
PWK/PhJ m 8775.435 816.0541 10382.4989 7168.3711
WSB/EiJ f 6449.1056 860.1965 8143.0997 4755.1114
WSB/EiJ m 6437.125 912.3762 8233.8771 4640.3729


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2619.3906 645.1474 3889.8862 1348.895
A/J both 3912.2188 645.1474 5182.7144 2641.7231
C57BL/6J both 5216.5 645.1474 6486.9956 3946.0044
CAST/EiJ both 7055.0639 642.7175 8320.7742 5789.3536
NOD/ShiLtJ both 6664.7562 626.9706 7899.456 5430.0565
NZO/HlLtJ both 3408.8676 625.8849 4641.4294 2176.3059
PWK/PhJ both 7528.4925 577.0374 8664.8583 6392.1267
WSB/EiJ both 6443.1153 626.9706 7677.8151 5208.4155




  GWAS USING LINEAR MIXED MODELS