Project measure / variable:   GMC03   touch_escape

ID, description, units MPD:55251   touch_escape   touch escape (0=no response, 1=response to touch, 2=flees prior to touch)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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GMC03 - touch escape (0=no response, 1=response to touch, 2=flees prior to touch)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means1.06   score 1.06   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.177 ± 0.154
Coefficient of variation (CV)0.166 0.145
Min–max range of strain means1.00   –   1.50   score 1.00   –   1.44   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0021 0.0021 0.057 0.8115
strain 7 6.5041 0.9292 25.7219 < 0.0001
sex:strain 7 0.0547 0.0078 0.2163 0.9815
Residuals 260 9.392 0.0361


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.35
129S1/SvImJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.4
A/J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.35
A/J m 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.4
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.35
C57BL/6J m 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.4
CAST/EiJ f 1.0 0.0   19 0.0 0.0 1.0, 1.0 -0.35
CAST/EiJ m 1.0 0.0   17 0.0 0.0 1.0, 1.0 -0.4
NOD/ShiLtJ f 1.0 0.0   18 0.0 0.0 1.0, 1.0 -0.35
NOD/ShiLtJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.4
NZO/HlLtJ f 1.0 0.0   17 0.0 0.0 1.0, 1.0 -0.35
NZO/HlLtJ m 1.0 0.0   17 0.0 0.0 1.0, 1.0 -0.4
PWK/PhJ f 1.0 0.0   20 0.0 0.0 1.0, 1.0 -0.35
PWK/PhJ m 1.05 0.213   22 0.0455 0.204 1.0, 2.0 -0.07
WSB/EiJ f 1.5 0.514   18 0.121 0.343 1.0, 2.0 2.47
WSB/EiJ m 1.44 0.512   16 0.128 0.356 1.0, 2.0 2.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 0.0475 1.0936 0.9064
129S1/SvImJ m 1.0 0.0475 1.0936 0.9064
A/J f 1.0 0.0475 1.0936 0.9064
A/J m 1.0 0.0475 1.0936 0.9064
C57BL/6J f 1.0 0.0475 1.0936 0.9064
C57BL/6J m 1.0 0.0475 1.0936 0.9064
CAST/EiJ f 1.0 0.0436 1.0859 0.9141
CAST/EiJ m 1.0 0.0461 1.0908 0.9092
NOD/ShiLtJ f 1.0 0.0448 1.0882 0.9118
NOD/ShiLtJ m 1.0 0.0475 1.0936 0.9064
NZO/HlLtJ f 1.0 0.0461 1.0908 0.9092
NZO/HlLtJ m 1.0 0.0461 1.0908 0.9092
PWK/PhJ f 1.0 0.0425 1.0837 0.9163
PWK/PhJ m 1.0455 0.0405 1.1252 0.9657
WSB/EiJ f 1.5 0.0448 1.5882 1.4118
WSB/EiJ m 1.4375 0.0475 1.5311 1.3439


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0 0.0336 1.0662 0.9338
A/J both 1.0 0.0336 1.0662 0.9338
C57BL/6J both 1.0 0.0336 1.0662 0.9338
CAST/EiJ both 1.0 0.0317 1.0625 0.9375
NOD/ShiLtJ both 1.0 0.0327 1.0643 0.9357
NZO/HlLtJ both 1.0 0.0326 1.0642 0.9358
PWK/PhJ both 1.0227 0.0294 1.0805 0.9649
WSB/EiJ both 1.4688 0.0327 1.533 1.4045




  GWAS USING LINEAR MIXED MODELS