Project measure / variable:   GMC01   distance_1

ID, description, units MPD:55011   distance_1   distance traveled, successive 5 min intervals   [cm]  1st 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled, successive 5 min intervals 1st 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means5000   cm 4728   cm
Median of the strain means4062   cm 3855   cm
SD of the strain means± 3428 ± 3275
Coefficient of variation (CV)0.686 0.693
Min–max range of strain means593   –   11025   cm 1001   –   10844   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11070264.8389 11070264.8389 5.7425 0.0173
strain 7 2614750344.718 373535763.5311 193.7648 < 0.0001
sex:strain 7 6503178.965 929025.5664 0.4819 0.8474
Residuals 259 499294827.504 1927779.2568


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2900.0 2413.0   16 603.0 0.832 799.0, 10966.0 -0.61
129S1/SvImJ m 2679.0 578.0   15 149.0 0.216 1623.0, 3527.0 -0.63
A/J f 593.0 312.0   16 78.0 0.526 209.0, 1086.0 -1.29
A/J m 1001.0 950.0   16 237.0 0.949 266.0, 4377.0 -1.14
C57BL/6J f 7749.0 1409.0   16 352.0 0.182 4777.0, 10389.0 0.8
C57BL/6J m 7056.0 1786.0   16 447.0 0.253 2911.0, 10836.0 0.71
CAST/EiJ f 4206.0 907.0   19 208.0 0.216 2807.0, 5990.0 -0.23
CAST/EiJ m 4022.0 951.0   18 224.0 0.236 2812.0, 6639.0 -0.22
NOD/ShiLtJ f 11025.0 1982.0   18 467.0 0.18 7587.0, 13953.0 1.76
NOD/ShiLtJ m 10844.0 2104.0   16 526.0 0.194 7166.0, 14284.0 1.87
NZO/HlLtJ f 2285.0 1119.0   17 271.0 0.49 1275.0, 6018.0 -0.79
NZO/HlLtJ m 1802.0 783.0   17 190.0 0.435 896.0, 3642.0 -0.89
PWK/PhJ f 3917.0 854.0   20 191.0 0.218 2465.0, 5610.0 -0.32
PWK/PhJ m 3688.0 863.0   22 184.0 0.234 1834.0, 5624.0 -0.32
WSB/EiJ f 7322.0 1623.0   18 383.0 0.222 4821.0, 10395.0 0.68
WSB/EiJ m 6733.0 1836.0   15 474.0 0.273 4595.0, 11036.0 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2900.2937 347.1112 3583.8132 2216.7743
129S1/SvImJ m 2678.8133 358.4949 3384.7492 1972.8775
A/J f 593.1375 347.1112 1276.657 -90.382
A/J m 1001.125 347.1112 1684.6445 317.6055
C57BL/6J f 7749.3188 347.1112 8432.8382 7065.7993
C57BL/6J m 7056.1312 347.1112 7739.6507 6372.6118
CAST/EiJ f 4205.7211 318.5311 4832.9615 3578.4806
CAST/EiJ m 4022.4111 327.2596 4666.8394 3377.9828
NOD/ShiLtJ f 11024.6722 327.2596 11669.1006 10380.2439
NOD/ShiLtJ m 10844.25 347.1112 11527.7695 10160.7305
NZO/HlLtJ f 2284.6706 336.7474 2947.7819 1621.5593
NZO/HlLtJ m 1801.5882 336.7474 2464.6995 1138.4769
PWK/PhJ f 3916.935 310.4657 4528.2934 3305.5766
PWK/PhJ m 3688.3091 296.0174 4271.2165 3105.4017
WSB/EiJ f 7321.7167 327.2596 7966.145 6677.2883
WSB/EiJ m 6732.52 358.4949 7438.4559 6026.5841


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2789.5535 249.5019 3280.8641 2298.243
A/J both 797.1312 245.4447 1280.4525 313.81
C57BL/6J both 7402.725 245.4447 7886.0463 6919.4037
CAST/EiJ both 4114.0661 228.3423 4563.71 3664.4222
NOD/ShiLtJ both 10934.4611 238.5294 11404.1649 10464.7573
NZO/HlLtJ both 2043.1294 238.1163 2512.0199 1574.2389
PWK/PhJ both 3802.622 214.485 4224.9786 3380.2655
WSB/EiJ both 7027.1183 242.7022 7505.0392 6549.1975




  GWAS USING LINEAR MIXED MODELS