Project measure / variable:   Loos2   short_shelter_num_DK

ID, description, units MPD:54077   short_shelter_num_DK   cumulative number of short shelter visits (sheltering), over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of short shelter visits (sheltering), over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means1.90   log(n)
Median of the strain means1.91   log(n)
SD of the strain means± 0.336
Coefficient of variation (CV)0.177
Min–max range of strain means1.15   –   2.42   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 42.3301 4.233 64.2121 < 0.0001
Residuals 426 28.0829 0.0659


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.68 0.435   59 0.0567 0.26 -0.66
A/J m 2.19 0.214   43 0.0326 0.0977 1.46, 2.55 0.86
BALB/cByJ m 2.42 0.289   44 0.0436 0.119 1.79, 2.88 1.54
C3H/HeJ m 1.15 0.217   29 0.0404 0.189 0.699, 1.59 -2.23
C57BL/6J m 2.1 0.177   107 0.0171 0.084 1.39, 2.52 0.59
CAST/EiJ m 1.82 0.239   14 0.0639 0.131 1.44, 2.29 -0.24
DBA/2J m 1.66 0.268   39 0.0428 0.162 0.934, 2.06 -0.72
FVB/NJ m 1.91 0.17   36 0.0283 0.0889 1.48, 2.39 0.03
NOD/ShiLtJ m 2.06 0.208   37 0.0342 0.101 1.63, 2.53 0.47
PWK/PhJ m 1.84 0.2   15 0.0515 0.108 1.55, 2.16 -0.18
WSB/EiJ m 2.08 0.166   14 0.0443 0.0796 1.76, 2.4 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.6761 0.0334 1.7418 1.6104
A/J m 2.1914 0.0392 2.2684 2.1145
BALB/cByJ m 2.4224 0.0387 2.4985 2.3464
C3H/HeJ m 1.1492 0.0477 1.2429 1.0555
C57BL/6J m 2.1032 0.0248 2.152 2.0544
CAST/EiJ m 1.8226 0.0686 1.9574 1.6877
DBA/2J m 1.6563 0.0411 1.7371 1.5755
FVB/NJ m 1.9127 0.0428 1.9968 1.8286
NOD/ShiLtJ m 2.0557 0.0422 2.1387 1.9728
PWK/PhJ m 1.8415 0.0663 1.9718 1.7112
WSB/EiJ m 2.0834 0.0686 2.2182 1.9485




  GWAS USING LINEAR MIXED MODELS