Project measure / variable:   Loos2   short_arrest_dur_mean_DK

ID, description, units MPD:54067   short_arrest_dur_mean_DK   mean duration per short arrest, over 3 days of testing, log10 transformed   [log(s)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - mean duration per short arrest, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.307   log(s)
Median of the strain means0.304   log(s)
SD of the strain means± 0.0386
Coefficient of variation (CV)0.126
Min–max range of strain means0.247   –   0.367   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 0.4648 0.0465 34.8895 < 0.0001
Residuals 426 0.5675 0.0013


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.304 0.053   59 0.0069 0.174 0.229, 0.517 -0.08
A/J m 0.285 0.0256   43 0.0039 0.0898 0.24, 0.353 -0.57
BALB/cByJ m 0.247 0.0288   44 0.00434 0.117 0.201, 0.321 -1.56
C3H/HeJ m 0.342 0.0348   29 0.00646 0.102 0.281, 0.404 0.9
C57BL/6J m 0.297 0.0277   107 0.00268 0.0934 0.233, 0.366 -0.26
CAST/EiJ m 0.314 0.0398   14 0.0106 0.127 0.265, 0.399 0.18
DBA/2J m 0.363 0.0402   39 0.00643 0.111 0.29, 0.465 1.45
FVB/NJ m 0.317 0.032   36 0.00533 0.101 0.246, 0.37 0.26
NOD/ShiLtJ m 0.272 0.0273   37 0.00449 0.1 0.217, 0.322 -0.91
PWK/PhJ m 0.367 0.0536   15 0.0138 0.146 0.297, 0.48 1.55
WSB/EiJ m 0.27 0.0564   14 0.0151 0.209 0.202, 0.406 -0.96


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.3041 0.0048 0.3134 0.2947
A/J m 0.2847 0.0056 0.2956 0.2737
BALB/cByJ m 0.2468 0.0055 0.2576 0.236
C3H/HeJ m 0.3418 0.0068 0.3552 0.3285
C57BL/6J m 0.2969 0.0035 0.3038 0.2899
CAST/EiJ m 0.3136 0.0098 0.3328 0.2945
DBA/2J m 0.3635 0.0058 0.3749 0.352
FVB/NJ m 0.317 0.0061 0.3289 0.305
NOD/ShiLtJ m 0.2721 0.006 0.2839 0.2603
PWK/PhJ m 0.3674 0.0094 0.3859 0.3488
WSB/EiJ m 0.2699 0.0098 0.2891 0.2507




  GWAS USING LINEAR MIXED MODELS