Project measure / variable:   Rusyn6   Cyp4a10_liver_tce

ID, description, units MPD:51228   Cyp4a10_liver_tce   Cyp4a10, mRNA in liver, relative to control group   [ratio]  
trichloroethylene study
Data set, strains Rusyn6   inbred   7 strains     sex: m     age: 6-7wks
Procedure RNA expression profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn6 - Cyp4a10, mRNA in liver, relative to control group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested7 strains
Mean of the strain means32.5   ratio
Median of the strain means10.8   ratio
SD of the strain means± 49.4
Coefficient of variation (CV)1.52
Min–max range of strain means2.70   –   141   ratio
Mean sample size per strain2.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 43224.107 7204.0178 51.7654 < 0.0001
Residuals 13 1809.165 139.1665


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 9.15 0.636   2   0.45 0.0696 8.7, 9.6 -0.47
A/J m 12.2 5.98   3 3.45 0.49 5.5, 17.0 -0.41
BTBR T+ Itpr3tf/J m 10.1 1.16   3 0.669 0.114 8.8, 10.9 -0.45
C57BL/6J m 10.8 9.67   3 5.58 0.895 4.2, 21.9 -0.44
CAST/EiJ m 2.7 2.8   3 1.62 1.04 0.7, 5.9 -0.6
NOD/ShiLtJ m 41.5 20.0   3 11.6 0.482 19.9, 59.4 0.18
NZW/LacJ m 141.0 19.1   3 11.0 0.136 123.0, 161.0 2.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 9.15 8.3417 27.1711 0.0
A/J m 12.2 6.8109 26.9141 0.0
BTBR T+ Itpr3tf/J m 10.1333 6.8109 24.8475 0.0
C57BL/6J m 10.8 6.8109 25.5141 0.0
CAST/EiJ m 2.7 6.8109 17.4141 0.0
NOD/ShiLtJ m 41.5333 6.8109 56.2475 26.8192
NZW/LacJ m 140.6667 6.8109 155.3808 125.9525




  GWAS USING LINEAR MIXED MODELS