Project measure / variable:   HMDPpheno7   erythronate

ID, description, units MPD:50201   erythronate   liver erythronate (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   102 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver erythronate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested102 strains
Mean of the strain means31697   None
Median of the strain means30030   None
SD of the strain means± 9096
Coefficient of variation (CV)0.287
Min–max range of strain means14704   –   69080   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 18 2838433722.1616 157690762.3423 1.4713 0.168
Residuals 31 3322589985.9562 107180322.1276


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 30672.0 0.0   1   0.0 0.0 30672.0, 30672.0 -0.11
A/J m 27853.0 1705.0   2   1206.0 0.0612 26647.0, 29058.0 -0.42
AKR/J m 28595.0 0.0   1   0.0 0.0 28595.0, 28595.0 -0.34
AXB10/PgnJ m 32634.0 0.0   1   0.0 0.0 32634.0, 32634.0 0.1
AXB12/PgnJ m 24663.0 0.0   1   0.0 0.0 24663.0, 24663.0 -0.77
AXB13/PgnJ m 37442.0 0.0   1   0.0 0.0 37442.0, 37442.0 0.63
AXB15/PgnJ m 37282.0 0.0   1   0.0 0.0 37282.0, 37282.0 0.61
AXB19a/PgnJ m 48299.0 0.0   1   0.0 0.0 48299.0, 48299.0 1.83
AXB19b/PgnJ m 32832.0 1776.0   2   1256.0 0.0541 31576.0, 34087.0 0.12
AXB19/PgnJ m 25150.0 0.0   1   0.0 0.0 25150.0, 25150.0 -0.72
AXB1/PgnJ m 23739.0 0.0   1   0.0 0.0 23739.0, 23739.0 -0.87
AXB23/PgnJ m 32725.0 0.0   1   0.0 0.0 32725.0, 32725.0 0.11
AXB24/PgnJ m 52860.0 12385.0   2   8757.0 0.234 44102.0, 61617.0 2.33
AXB2/PgnJ m 21689.0 0.0   1   0.0 0.0 21689.0, 21689.0 -1.1
AXB4/PgnJ m 22871.0 0.0   1   0.0 0.0 22871.0, 22871.0 -0.97
AXB5/PgnJ m 29590.0 0.0   1   0.0 0.0 29590.0, 29590.0 -0.23
AXB6/PgnJ m 28817.0 0.0   1   0.0 0.0 28817.0, 28817.0 -0.32
AXB8/PgnJ m 27406.0 0.0   1   0.0 0.0 27406.0, 27406.0 -0.47
BALB/cJ m 41483.0 12862.0   3 7426.0 0.31 33225.0, 56302.0 1.08
BTBR T+ Itpr3tf/J m 35151.0 0.0   1   0.0 0.0 35151.0, 35151.0 0.38
BUB/BnJ m 24869.0 0.0   1   0.0 0.0 24869.0, 24869.0 -0.75
BXA11/PgnJ m 33677.0 0.0   1   0.0 0.0 33677.0, 33677.0 0.22
BXA12/PgnJ m 17462.0 0.0   1   0.0 0.0 17462.0, 17462.0 -1.57
BXA13/PgnJ m 22045.0 0.0   1   0.0 0.0 22045.0, 22045.0 -1.06
BXA14/PgnJ m 42821.0 0.0   1   0.0 0.0 42821.0, 42821.0 1.22
BXA16/PgnJ m 28176.0 0.0   1   0.0 0.0 28176.0, 28176.0 -0.39
BXA1/PgnJ m 30086.0 0.0   1   0.0 0.0 30086.0, 30086.0 -0.18
BXA24/PgnJ m 35930.0 0.0   1   0.0 0.0 35930.0, 35930.0 0.47
BXA25/PgnJ m 28606.0 0.0   1   0.0 0.0 28606.0, 28606.0 -0.34
BXA26/PgnJ m 33572.0 0.0   1   0.0 0.0 33572.0, 33572.0 0.21
BXA2/PgnJ m 40857.0 0.0   1   0.0 0.0 40857.0, 40857.0 1.01
BXA4/PgnJ m 38073.0 0.0   1   0.0 0.0 38073.0, 38073.0 0.7
BXA7/PgnJ m 34170.0 0.0   1   0.0 0.0 34170.0, 34170.0 0.27
BXA8/PgnJ m 30830.0 0.0   1   0.0 0.0 30830.0, 30830.0 -0.1
BXD11/TyJ m 30187.0 0.0   1   0.0 0.0 30187.0, 30187.0 -0.17
BXD12/TyJ m 24221.0 0.0   1   0.0 0.0 24221.0, 24221.0 -0.82
BXD13/TyJ m 34067.0 0.0   1   0.0 0.0 34067.0, 34067.0 0.26
BXD14/TyJ m 30871.0 0.0   1   0.0 0.0 30871.0, 30871.0 -0.09
BXD15/TyJ m 30618.0 0.0   1   0.0 0.0 30618.0, 30618.0 -0.12
BXD18/TyJ m 28792.0 0.0   1   0.0 0.0 28792.0, 28792.0 -0.32
BXD19/TyJ m 47482.0 0.0   1   0.0 0.0 47482.0, 47482.0 1.74
BXD1/TyJ m 25922.0 0.0   1   0.0 0.0 25922.0, 25922.0 -0.63
BXD20/TyJ m 27373.0 0.0   1   0.0 0.0 27373.0, 27373.0 -0.48
BXD21/TyJ m 21099.0 0.0   1   0.0 0.0 21099.0, 21099.0 -1.17
BXD22/TyJ m 20740.0 0.0   1   0.0 0.0 20740.0, 20740.0 -1.2
BXD24/TyJ m 31942.0 0.0   1   0.0 0.0 31942.0, 31942.0 0.03
BXD28/TyJ m 19024.0 5953.0   2   4209.0 0.313 14814.0, 23233.0 -1.39
BXD2/TyJ m 25964.0 0.0   1   0.0 0.0 25964.0, 25964.0 -0.63
BXD32/TyJ m 40011.0 0.0   1   0.0 0.0 40011.0, 40011.0 0.91
BXD33/TyJ m 48394.0 0.0   1   0.0 0.0 48394.0, 48394.0 1.84
BXD34/TyJ m 20877.0 0.0   1   0.0 0.0 20877.0, 20877.0 -1.19
BXD36/TyJ m 25325.0 0.0   1   0.0 0.0 25325.0, 25325.0 -0.7
BXD38/TyJ m 27325.0 0.0   1   0.0 0.0 27325.0, 27325.0 -0.48
BXD39/TyJ m 27508.0 0.0   1   0.0 0.0 27508.0, 27508.0 -0.46
BXD40/TyJ m 27048.0 0.0   1   0.0 0.0 27048.0, 27048.0 -0.51
BXD42/TyJ m 29975.0 0.0   1   0.0 0.0 29975.0, 29975.0 -0.19
BXD5/TyJ m 38952.0 0.0   1   0.0 0.0 38952.0, 38952.0 0.8
BXD6/TyJ m 38421.0 0.0   1   0.0 0.0 38421.0, 38421.0 0.74
BXD8/TyJ m 37027.0 0.0   1   0.0 0.0 37027.0, 37027.0 0.59
BXD9/TyJ m 29557.0 0.0   1   0.0 0.0 29557.0, 29557.0 -0.24
BXH10/TyJ m 20810.0 0.0   1   0.0 0.0 20810.0, 20810.0 -1.2
BXH19/TyJ m 35867.0 0.0   1   0.0 0.0 35867.0, 35867.0 0.46
BXH20/KccJ m 43304.0 0.0   1   0.0 0.0 43304.0, 43304.0 1.28
BXH22/KccJ m 14704.0 0.0   1   0.0 0.0 14704.0, 14704.0 -1.87
BXH2/TyJ m 32013.0 0.0   1   0.0 0.0 32013.0, 32013.0 0.03
BXH4/TyJ m 42838.0 20301.0   2   14355.0 0.474 28483.0, 57193.0 1.22
BXH6/TyJ m 42067.0 0.0   1   0.0 0.0 42067.0, 42067.0 1.14
BXH7/TyJ m 24515.0 0.0   1   0.0 0.0 24515.0, 24515.0 -0.79
BXH8/TyJ m 34436.0 0.0   1   0.0 0.0 34436.0, 34436.0 0.3
BXH9/TyJ m 25757.0 0.0   1   0.0 0.0 25757.0, 25757.0 -0.65
C3H/HeJ m 35809.0 11209.0   2   7926.0 0.313 27883.0, 43735.0 0.45
C57BL/6J m 29118.0 5159.0   5 2307.0 0.177 21933.0, 34625.0 -0.28
C57L/J m 22630.0 0.0   1   0.0 0.0 22630.0, 22630.0 -1.0
C58/J m 21202.0 0.0   1   0.0 0.0 21202.0, 21202.0 -1.15
CAST/EiJ m 51772.0 0.0   1   0.0 0.0 51772.0, 51772.0 2.21
CBA/J m 17400.0 0.0   1   0.0 0.0 17400.0, 17400.0 -1.57
CE/J m 43844.0 0.0   1   0.0 0.0 43844.0, 43844.0 1.34
CXB11/HiAJ m 27907.0 2804.0   2   1983.0 0.1 25925.0, 29890.0 -0.42
CXB12/HiAJ m 28171.0 5090.0   2   3599.0 0.181 24572.0, 31770.0 -0.39
CXB13/HiAJ m 38380.0 22929.0   3 13238.0 0.597 24689.0, 64851.0 0.73
CXB1/ByJ m 44477.0 8237.0   3 4756.0 0.185 35042.0, 50240.0 1.41
CXB2/ByJ m 38378.0 3976.0   3 2295.0 0.104 34331.0, 42279.0 0.73
CXB3/ByJ m 45526.0 0.0   1   0.0 0.0 45526.0, 45526.0 1.52
CXB4/ByJ m 41139.0 10146.0   2   7174.0 0.247 33964.0, 48313.0 1.04
CXB6/ByJ m 27501.0 6390.0   3 3689.0 0.232 21114.0, 33895.0 -0.46
CXB7/ByJ m 29218.0 9842.0   2   6960.0 0.337 22258.0, 36177.0 -0.27
CXB8/HiAJ m 40568.0 10177.0   3 5876.0 0.251 28856.0, 47264.0 0.98
CXB9/HiAJ m 30618.0 13387.0   3 7729.0 0.437 15945.0, 42164.0 -0.12
DBA/2J m 28251.0 4204.0   4 2102.0 0.149 24243.0, 33278.0 -0.38
FVB/NJ m 29094.0 0.0   1   0.0 0.0 29094.0, 29094.0 -0.29
I/LnJ m 29705.0 0.0   1   0.0 0.0 29705.0, 29705.0 -0.22
KK/HlJ m 46470.0 0.0   1   0.0 0.0 46470.0, 46470.0 1.62
LG/J m 28566.0 0.0   1   0.0 0.0 28566.0, 28566.0 -0.34
LP/J m 16620.0 0.0   1   0.0 0.0 16620.0, 16620.0 -1.66
MA/MyJ m 30403.0 0.0   1   0.0 0.0 30403.0, 30403.0 -0.14
NOD/ShiLtJ m 17396.0 0.0   1   0.0 0.0 17396.0, 17396.0 -1.57
PL/J m 31961.0 0.0   1   0.0 0.0 31961.0, 31961.0 0.03
RIIIS/J m 69080.0 0.0   1   0.0 0.0 69080.0, 69080.0 4.11
SEA/GnJ m 18048.0 0.0   1   0.0 0.0 18048.0, 18048.0 -1.5
SJL/J m 23476.0 0.0   1   0.0 0.0 23476.0, 23476.0 -0.9
SM/J m 25537.0 0.0   1   0.0 0.0 25537.0, 25537.0 -0.68
SWR/J m 36888.0 0.0   1   0.0 0.0 36888.0, 36888.0 0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 27852.75 7320.5301 42783.0696 12922.4304
AXB19b/PgnJ m 32831.75 7320.5301 47762.0696 17901.4304
AXB24/PgnJ m 52859.6 7320.5301 67789.9196 37929.2804
BALB/cJ m 41482.5667 5977.1878 53673.1216 29292.0118
BXD28/TyJ m 19023.85 7320.5301 33954.1696 4093.5304
BXH4/TyJ m 42837.95 7320.5301 57768.2696 27907.6304
C3H/HeJ m 35809.1 7320.5301 50739.4196 20878.7804
C57BL/6J m 29117.76 4629.9098 38560.5232 19674.9968
CXB11/HiAJ m 27907.45 7320.5301 42837.7696 12977.1304
CXB12/HiAJ m 28171.3 7320.5301 43101.6196 13240.9804
CXB13/HiAJ m 38380.4667 5977.1878 50571.0216 26189.9118
CXB1/ByJ m 44476.5333 5977.1878 56667.0882 32285.9784
CXB2/ByJ m 38378.4 5977.1878 50568.9549 26187.8451
CXB4/ByJ m 41138.9 7320.5301 56069.2196 26208.5804
CXB6/ByJ m 27501.2333 5977.1878 39691.7882 15310.6784
CXB7/ByJ m 29217.75 7320.5301 44148.0696 14287.4304
CXB8/HiAJ m 40567.5 5977.1878 52758.0549 28376.9451
CXB9/HiAJ m 30618.3 5977.1878 42808.8549 18427.7451
DBA/2J m 28250.575 5176.3965 38807.9052 17693.2448




  GWAS USING LINEAR MIXED MODELS