Project measure / variable:   Rusyn5   necrosis_hf

ID, description, units MPD:43017   necrosis_hf   liver necrosis (0-2)   [score]  high-fat only  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - liver necrosis (0-2) high-fat only



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means0.0834   score
Median of the strain means0   score
SD of the strain means± 0.268
Coefficient of variation (CV)3.21
Min–max range of strain means0   –   1.00   score
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 2.7917 0.2147 2.7751 0.0115
Residuals 28 2.1667 0.0774


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0 0.0   3 0.0 0.0 -0.31
AKR/J m 0.167 0.289   3 0.167 1.73 0.31
BALB/cByJ m 0.0 0.0   3 0.0 0.0 -0.31
BALB/cJ m 0.0 0.0   3 0.0 0.0 -0.31
BTBR T+ Itpr3tf/J m 0.0 0.0   3 0.0 0.0 -0.31
C3H/HeJ m 0.0 0.0   3 0.0 0.0 -0.31
C57BL/10J m 0.0 0.0   3 0.0 0.0 -0.31
DBA/2J m 0.0 0.0   3 0.0 0.0 -0.31
FVB/NJ m 0.0 0.0   3 0.0 0.0 -0.31
KK/HlJ m 1.0 1.0   3 0.577 1.0 3.43
MOLF/EiJ m 0.0 0.0   3 0.0 0.0 -0.31
NZW/LacJ m 0.0 0.0   3 0.0 0.0 -0.31
PWD/PhJ m 0.0 0.0   3 0.0 0.0 -0.31
WSB/EiJ m 0.0 0.0   3 0.0 0.0 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 0.1606 0.329 -0.329
AKR/J m 0.1667 0.1606 0.4956 -0.1623
BALB/cByJ m 0.0 0.1606 0.329 -0.329
BALB/cJ m 0.0 0.1606 0.329 -0.329
BTBR T+ Itpr3tf/J m 0.0 0.1606 0.329 -0.329
C3H/HeJ m 0.0 0.1606 0.329 -0.329
C57BL/10J m 0.0 0.1606 0.329 -0.329
DBA/2J m 0.0 0.1606 0.329 -0.329
FVB/NJ m 0.0 0.1606 0.329 -0.329
KK/HlJ m 1.0 0.1606 1.329 0.671
MOLF/EiJ m 0.0 0.1606 0.329 -0.329
NZW/LacJ m 0.0 0.1606 0.329 -0.329
PWD/PhJ m 0.0 0.1606 0.329 -0.329
WSB/EiJ m 0.0 0.1606 0.329 -0.329




  GWAS USING LINEAR MIXED MODELS