Project measure / variable:   Ackert1   pctfat_M12

ID, description, units MPD:25037   pctfat_M12   percent fat, head excluded   [%]  at age 12mo  
Data set, strains Ackert1   inbred   30 strains     sex: both     age: 52wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Ackert1 - percent fat, head excluded at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains28 strains
Mean of the strain means26.9   % 25.4   %
Median of the strain means26.8   % 25.4   %
SD of the strain means± 9.26 ± 7.34
Coefficient of variation (CV)0.344 0.290
Min–max range of strain means15.8   –   55.9   % 14.0   –   40.0   %
Mean sample size per strain7.6   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 473.1715 473.1715 15.0081 0.0001
strain 26 21610.9824 831.1916 26.3638 < 0.0001
sex:strain 26 5668.3286 218.0126 6.9149 < 0.0001
Residuals 345 10877.0718 31.5277


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 27.7 3.6   8 1.27 0.13 22.8, 34.9 0.08
129S1/SvImJ m 37.3 4.81   8 1.7 0.129 31.0, 46.3 1.63
A/J f 34.4 5.34   8 1.89 0.155 28.6, 45.6 0.81
A/J m 27.4 3.17   3 1.83 0.115 24.1, 30.4 0.28
AKR/J f 22.3 7.12   3 4.11 0.319 14.7, 28.8 -0.5
BALB/cByJ f 23.1 3.94   8 1.39 0.17 16.7, 27.2 -0.41
BALB/cByJ m 20.3 2.95   7 1.11 0.145 16.3, 23.9 -0.69
BTBR T+ Itpr3tf/J f 33.6 7.03   7 2.66 0.209 19.7, 41.2 0.72
BTBR T+ Itpr3tf/J m 26.8 5.82   8 2.06 0.218 17.2, 32.8 0.2
BUB/BnJ f 15.8 2.88   7 1.09 0.182 9.86, 18.6 -1.2
BUB/BnJ m 17.1 2.76   8 0.975 0.162 12.8, 20.6 -1.12
C3H/HeJ f 18.7 4.47   7 1.69 0.24 13.8, 27.0 -0.89
C3H/HeJ m 18.3 4.11   7 1.55 0.225 14.6, 24.6 -0.96
C57BL/10J f 27.3 7.38   8 2.61 0.27 17.2, 38.4 0.04
C57BL/10J m 28.3 7.16   6 2.92 0.253 18.8, 40.6 0.4
C57BL/6J f 26.8 6.09   8 2.15 0.227 17.2, 38.1 -0.01
C57BL/6J m 28.2 5.97   8 2.11 0.212 21.6, 38.1 0.39
C57BLKS/J f 23.6 3.05   8 1.08 0.129 19.0, 29.9 -0.36
C57BLKS/J m 20.0 2.85   8 1.01 0.143 16.0, 24.6 -0.73
C57BR/cdJ f 19.9 3.63   7 1.37 0.183 15.4, 24.8 -0.76
C57BR/cdJ m 25.2 8.54   3 4.93 0.339 15.7, 32.2 -0.02
C57L/J f 28.6 6.11   8 2.16 0.214 19.8, 41.0 0.18
C57L/J m 40.0 3.44   8 1.21 0.0859 35.8, 45.4 1.99
CBA/J f 43.4 8.07   8 2.85 0.186 27.8, 56.0 1.78
CBA/J m 33.0 5.66   8 2.0 0.172 26.4, 42.9 1.04
DBA/2J f 31.9 8.05   8 2.85 0.252 18.7, 45.6 0.54
DBA/2J m 15.4 4.77   9 1.59 0.31 9.09, 25.6 -1.36
FVB/NJ f 22.9 5.98   7 2.26 0.261 16.3, 31.0 -0.44
FVB/NJ m 21.1 4.44   9 1.48 0.21 16.0, 30.7 -0.58
KK/HlJ f 33.2 8.02   8 2.83 0.242 18.3, 41.2 0.68
KK/HlJ m 28.0 4.19   9 1.4 0.149 21.3, 33.6 0.36
LP/J f 21.6 3.76   8 1.33 0.175 13.2, 26.4 -0.58
LP/J m 18.5 0.835   10 0.264 0.0452 16.9, 19.8 -0.93
MRL/MpJ f 30.7 5.08   5 2.27 0.166 22.1, 34.5 0.41
MRL/MpJ m 20.8 9.1   3 5.25 0.437 15.2, 31.3 -0.62
NOD.B10Sn-H2b/J f 17.9 2.71   8 0.959 0.152 15.2, 22.3 -0.98
NOD.B10Sn-H2b/J m 20.0 3.35   8 1.18 0.167 15.3, 24.7 -0.73
NON/ShiLtJ f 27.4 8.23   9 2.74 0.301 18.4, 43.5 0.05
NON/ShiLtJ m 36.2 10.3   8 3.65 0.285 19.3, 49.0 1.48
NZO/HlLtJ f 55.9 6.58   7 2.49 0.118 43.4, 62.9 3.13
NZO/HlLtJ m 39.9 15.7   4 7.83 0.392 18.8, 53.1 1.98
NZW/LacJ f 43.8 7.26   9 2.42 0.166 29.8, 53.6 1.82
NZW/LacJ m 26.2 5.02   8 1.77 0.191 18.6, 34.9 0.12
P/J m 19.6 5.4   3 3.12 0.276 13.7, 24.3 -0.78
PL/J f 21.2 2.19   4 1.09 0.103 19.4, 24.4 -0.62
PL/J m 25.5 4.04   8 1.43 0.158 20.0, 30.3 0.02
PWD/PhJ f 19.4 2.2   9 0.733 0.113 15.9, 22.8 -0.81
PWD/PhJ m 23.6 4.74   9 1.58 0.2 17.2, 33.7 -0.24
RIIIS/J f 28.7 6.24   8 2.21 0.217 21.0, 38.0 0.19
RIIIS/J m 34.5 8.61   8 3.04 0.25 25.8, 47.0 1.25
SJL/J f 17.1 3.33   8 1.18 0.195 12.5, 23.8 -1.06
SM/J f 30.6 6.22   8 2.2 0.203 20.6, 37.4 0.4
SM/J m 26.1 6.88   8 2.43 0.264 17.8, 35.7 0.1
SWR/J f 17.4 3.0   8 1.06 0.173 11.8, 20.9 -1.03
SWR/J m 14.0 1.97   7 0.743 0.14 11.8, 17.5 -1.55
WSB/EiJ f 16.3 2.58   7 0.976 0.159 11.3, 19.8 -1.15
WSB/EiJ m 18.6 2.31   4 1.16 0.125 15.8, 20.7 -0.92


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 27.675 1.9852 31.5796 23.7704
129S1/SvImJ m 37.2625 1.9852 41.1671 33.3579
A/J f 34.4 1.9852 38.3046 30.4954
A/J m 27.4333 3.2418 33.8095 21.0572
BALB/cByJ f 23.1125 1.9852 27.0171 19.2079
BALB/cByJ m 20.2571 2.1223 24.4313 16.083
BTBR T+ Itpr3tf/J f 33.5714 2.1223 37.7456 29.3972
BTBR T+ Itpr3tf/J m 26.7625 1.9852 30.6671 22.8579
BUB/BnJ f 15.8371 2.1223 20.0113 11.663
BUB/BnJ m 17.0625 1.9852 20.9671 13.1579
C3H/HeJ f 18.6571 2.1223 22.8313 14.483
C3H/HeJ m 18.2714 2.1223 22.4456 14.0972
C57BL/10J f 27.3375 1.9852 31.2421 23.4329
C57BL/10J m 28.3 2.2923 32.8086 23.7914
C57BL/6J f 26.7875 1.9852 30.6921 22.8829
C57BL/6J m 28.1875 1.9852 32.0921 24.2829
C57BLKS/J f 23.65 1.9852 27.5546 19.7454
C57BLKS/J m 19.9875 1.9852 23.8921 16.0829
C57BR/cdJ f 19.8571 2.1223 24.0313 15.683
C57BR/cdJ m 25.2333 3.2418 31.6095 18.8572
C57L/J f 28.5875 1.9852 32.4921 24.6829
C57L/J m 39.9875 1.9852 43.8921 36.0829
CBA/J f 43.3625 1.9852 47.2671 39.4579
CBA/J m 33.025 1.9852 36.9296 29.1204
DBA/2J f 31.9375 1.9852 35.8421 28.0329
DBA/2J m 15.3544 1.8717 19.0357 11.6732
FVB/NJ f 22.9 2.1223 27.0742 18.7258
FVB/NJ m 21.0889 1.8717 24.7702 17.4076
KK/HlJ f 33.175 1.9852 37.0796 29.2704
KK/HlJ m 28.0222 1.8717 31.7035 24.3409
LP/J f 21.55 1.9852 25.4546 17.6454
LP/J m 18.48 1.7756 21.9724 14.9876
MRL/MpJ f 30.7 2.5111 35.639 25.761
MRL/MpJ m 20.8 3.2418 27.1762 14.4238
NOD.B10Sn-H2b/J f 17.85 1.9852 21.7546 13.9454
NOD.B10Sn-H2b/J m 20.0125 1.9852 23.9171 16.1079
NON/ShiLtJ f 27.3667 1.8717 31.048 23.6854
NON/ShiLtJ m 36.225 1.9852 40.1296 32.3204
NZO/HlLtJ f 55.8714 2.1223 60.0456 51.6972
NZO/HlLtJ m 39.925 2.8075 45.4469 34.4031
NZW/LacJ f 43.7667 1.8717 47.448 40.0854
NZW/LacJ m 26.225 1.9852 30.1296 22.3204
PL/J f 21.25 2.8075 26.7719 15.7281
PL/J m 25.5375 1.9852 29.4421 21.6329
PWD/PhJ f 19.4444 1.8717 23.1257 15.7632
PWD/PhJ m 23.6333 1.8717 27.3146 19.952
RIIIS/J f 28.725 1.9852 32.6296 24.8204
RIIIS/J m 34.4875 1.9852 38.3921 30.5829
SM/J f 30.575 1.9852 34.4796 26.6704
SM/J m 26.1 1.9852 30.0046 22.1954
SWR/J f 17.375 1.9852 21.2796 13.4704
SWR/J m 14.0429 2.1223 18.217 9.8687
WSB/EiJ f 16.2714 2.1223 20.4456 12.0972
WSB/EiJ m 18.55 2.8075 24.0719 13.0281


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 32.4687 1.4037 35.2297 29.7078
A/J both 30.9167 1.9007 34.655 27.1783
BALB/cByJ both 21.6848 1.453 24.5427 18.827
BTBR T+ Itpr3tf/J both 30.167 1.453 33.0248 27.3091
BUB/BnJ both 16.4498 1.453 19.3077 13.592
C3H/HeJ both 18.4643 1.5007 21.4159 15.5127
C57BL/10J both 27.8187 1.5162 30.8009 24.8366
C57BL/6J both 27.4875 1.4037 30.2485 24.7265
C57BLKS/J both 21.8187 1.4037 24.5797 19.0578
C57BR/cdJ both 22.5452 1.9373 26.3557 18.7347
C57L/J both 34.2875 1.4037 37.0485 31.5265
CBA/J both 38.1937 1.4037 40.9547 35.4328
DBA/2J both 23.646 1.3642 26.3291 20.9628
FVB/NJ both 21.9944 1.4148 24.7772 19.2117
KK/HlJ both 30.5986 1.3642 33.2818 27.9154
LP/J both 20.015 1.3317 22.6343 17.3957
MRL/MpJ both 25.75 2.0503 29.7826 21.7174
NOD.B10Sn-H2b/J both 18.9312 1.4037 21.6922 16.1703
NON/ShiLtJ both 31.7958 1.3642 34.479 29.1127
NZO/HlLtJ both 47.8982 1.7597 51.3593 44.4372
NZW/LacJ both 34.9958 1.3642 37.679 32.3127
PL/J both 23.3937 1.7192 26.7752 20.0123
PWD/PhJ both 21.5389 1.3235 24.142 18.9358
RIIIS/J both 31.6063 1.4037 34.3672 28.8453
SM/J both 28.3375 1.4037 31.0985 25.5765
SWR/J both 15.7089 1.453 18.5668 12.8511
WSB/EiJ both 17.4107 1.7597 20.8718 13.9497




  GWAS USING LINEAR MIXED MODELS