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Project measure / variable:   Naggert1   leanwt_fat8

ID, description, units MPD:14318   leanwt_fat8   weight of lean portion of tissue mass, head excluded   [g]  
high-fat diet study
Data set, strains Naggert1   inbred w/CC7   41 strains     sex: both     age: 15-17wks
Procedure DXA
Ontology mappings

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  STRAIN COMPARISON PLOT
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Naggert1 - weight of lean portion of tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains38 strains
Mean of the strain means16.4   g 20.7   g
Median of the strain means16.6   g 21.3   g
SD of the strain means± 3.57 ± 4.12
Coefficient of variation (CV)0.218 0.199
Min–max range of strain means8.81   –   23.0   g 11.0   –   27.3   g
Mean sample size per strain9.8   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2475.4348 2475.4348 1201.5945 < 0.0001
strain 35 9668.4459 276.2413 134.0896 < 0.0001
sex:strain 35 465.2476 13.2928 6.4524 < 0.0001
Residuals 638 1314.3597 2.0601


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.9 0.96   8 0.339 0.0604 14.3, 17.6 -0.14
129S1/SvImJ m 20.2 1.37   10 0.433 0.0679 18.4, 22.2 -0.13
A/J f 15.1 0.611   10 0.193 0.0404 14.2, 16.1 -0.37
A/J m 18.2 1.3   10 0.411 0.0715 16.2, 20.1 -0.62
AKR/J f 22.1 1.9   18 0.449 0.0862 17.8, 25.2 1.6
AKR/J m 26.4 2.65   17 0.642 0.1 20.5, 30.7 1.37
BALB/cByJ m 22.5 3.17   9 1.06 0.141 15.3, 25.6 0.43
BALB/cJ f 17.6 1.03   9 0.342 0.0583 15.9, 19.0 0.33
BALB/cJ m 22.9 0.947   10 0.299 0.0413 21.8, 25.1 0.52
BTBR T+ Itpr3tf/J f 23.0 0.924   10 0.292 0.0401 22.0, 24.5 1.85
BTBR T+ Itpr3tf/J m 27.3 0.993   10 0.314 0.0364 25.3, 28.3 1.59
BUB/BnJ f 21.6 1.9   12 0.548 0.0878 18.3, 25.2 1.46
BUB/BnJ m 24.9 0.682   8 0.241 0.0274 24.0, 25.7 1.01
C3H/HeJ f 16.9 1.45   10 0.459 0.0857 15.0, 18.9 0.14
C3H/HeJ m 22.4 1.3   10 0.411 0.058 20.2, 24.3 0.4
C57BL/10J f 17.0 0.946   9 0.315 0.0557 15.9, 18.8 0.17
C57BL/10J m 22.6 1.01   12 0.293 0.0449 20.2, 23.8 0.45
C57BL/6J f 16.4 0.809   10 0.256 0.0492 15.1, 17.4 0.0
C57BL/6J m 20.7 1.31   10 0.414 0.0633 18.8, 22.5 -0.01
C57BLKS/J f 16.4 0.921   12 0.266 0.0562 14.5, 17.8 0.0
C57BLKS/J m 19.5 1.07   10 0.338 0.0548 17.8, 21.3 -0.3
C57BR/cdJ f 17.7 1.54   12 0.445 0.0872 14.2, 19.2 0.36
C57BR/cdJ m 23.3 1.46   10 0.463 0.0628 20.7, 24.7 0.62
C57L/J f 16.3 0.677   10 0.214 0.0417 15.2, 17.4 -0.03
C57L/J m 22.5 1.55   10 0.491 0.0689 20.5, 25.6 0.43
C58/J f 18.8 1.93   11 0.581 0.103 15.3, 22.2 0.67
C58/J m 21.2 1.27   9 0.423 0.0598 19.5, 23.7 0.11
CAST/EiJ f 11.5 0.63   9 0.21 0.0547 10.3, 12.1 -1.37
CAST/EiJ m 14.3 0.543   8 0.192 0.0381 13.6, 15.2 -1.56
CBA/J f 18.7 1.22   10 0.385 0.065 16.6, 20.7 0.64
CBA/J m 25.3 1.63   8 0.578 0.0646 22.3, 27.6 1.11
CZECHII/EiJ f 10.5 1.23   16 0.307 0.117 8.36, 12.7 -1.65
CZECHII/EiJ m 12.1 0.831   11 0.251 0.069 10.8, 13.6 -2.1
DBA/1J f 17.0 1.26   12 0.364 0.0741 15.1, 18.8 0.17
DBA/1J m 19.9 1.34   7 0.505 0.0672 17.7, 21.9 -0.2
DBA/2J f 19.7 0.833   9 0.278 0.0424 18.3, 20.4 0.92
DBA/2J m 23.6 1.55   9 0.515 0.0656 20.4, 25.4 0.69
FVB/NJ f 16.5 1.76   9 0.587 0.107 14.1, 18.5 0.03
FVB/NJ m 24.3 1.23   10 0.39 0.0506 21.8, 25.9 0.86
I/LnJ f 16.2 1.43   9 0.476 0.0882 14.1, 18.2 -0.06
I/LnJ m 20.2 1.38   12 0.398 0.0682 18.4, 22.1 -0.13
JF1/MsJ f 13.5 0.723   10 0.229 0.0534 12.8, 14.8 -0.81
JF1/MsJ m 17.1 1.91   7 0.72 0.112 15.4, 21.2 -0.88
KK/HlJ f 20.9 1.74   8 0.616 0.0832 19.1, 24.0 1.26
KK/HlJ m 23.5 1.66   9 0.554 0.0705 21.7, 27.1 0.67
LP/J f 16.6 0.739   9 0.246 0.0444 15.5, 17.5 0.05
LP/J m 21.6 2.2   9 0.733 0.102 17.7, 24.7 0.21
MA/MyJ f 16.6 1.34   9 0.447 0.081 14.8, 19.0 0.05
MA/MyJ m 20.3 1.76   10 0.558 0.0868 18.7, 24.7 -0.11
MOLF/EiJ f 11.2 1.32   7 0.5 0.118 9.32, 12.6 -1.46
MOLF/EiJ m 13.6 0.81   7 0.306 0.0597 12.6, 14.7 -1.73
MSM/MsJ f 9.17 0.704   8 0.249 0.0768 8.11, 10.3 -2.03
MSM/MsJ m 11.0 0.623   12 0.18 0.0566 9.75, 12.0 -2.36
NOD/ShiLtJ f 19.9 2.1   15 0.541 0.106 15.9, 23.1 0.98
NOD/ShiLtJ m 23.0 2.12   8 0.751 0.0921 20.6, 26.4 0.55
NON/ShiLtJ f 21.7 1.04   10 0.328 0.048 20.5, 23.2 1.48
NON/ShiLtJ m 23.0 1.2   10 0.379 0.0522 21.1, 24.6 0.55
NZB/BlNJ m 25.7 1.03   10 0.327 0.0402 24.5, 28.0 1.2
NZW/LacJ f 20.5 0.988   10 0.312 0.0483 18.9, 22.1 1.15
NZW/LacJ m 26.4 1.59   10 0.503 0.0604 24.3, 28.9 1.37
PERA/EiJ f 16.7 1.39   9 0.462 0.083 14.3, 18.3 0.08
PERA/EiJ m 20.3 1.84   9 0.613 0.0905 16.9, 22.4 -0.11
PL/J f 8.81 3.12   10 0.987 0.354 6.0, 14.9 -2.13
PWK/PhJ f 13.9 1.02   7 0.384 0.0731 11.8, 15.0 -0.7
RIIIS/J f 14.3 0.851   9 0.284 0.0597 12.8, 15.7 -0.59
SEA/GnJ f 19.0 1.11   9 0.371 0.0586 17.2, 20.6 0.73
SEA/GnJ m 20.7 1.32   10 0.418 0.0638 17.9, 22.3 -0.01
SJL/J f 16.1 0.739   9 0.246 0.0458 14.8, 17.3 -0.09
SJL/J m 20.0 1.03   15 0.267 0.0516 18.1, 21.6 -0.18
SM/J f 12.8 1.99   9 0.664 0.155 9.08, 15.7 -1.01
SM/J m 19.5 0.842   9 0.281 0.0433 18.5, 20.8 -0.3
SPRET/EiJ f 14.0 2.34   4 1.17 0.167 11.7, 17.1 -0.67
SPRET/EiJ m 13.8 3.54   6 1.45 0.257 11.7, 20.9 -1.68
SWR/J f 18.4 1.12   10 0.354 0.0609 15.6, 19.5 0.56
SWR/J m 21.4 2.45   10 0.775 0.115 15.3, 23.9 0.16
WSB/EiJ f 10.8 1.06   8 0.376 0.0984 9.63, 12.2 -1.57
WSB/EiJ m 13.0 1.16   9 0.386 0.0891 11.4, 15.0 -1.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.8977 0.5075 16.8942 14.9013
129S1/SvImJ m 20.1565 0.4539 21.0478 19.2652
A/J f 15.1258 0.4539 16.0171 14.2345
A/J m 18.1757 0.4539 19.067 17.2844
AKR/J f 22.0908 0.3383 22.7551 21.4264
AKR/J m 26.4067 0.3481 27.0903 25.7231
BALB/cJ f 17.6259 0.4784 18.5654 16.6864
BALB/cJ m 22.9304 0.4539 23.8217 22.0391
BTBR T+ Itpr3tf/J f 23.0323 0.4539 23.9236 22.141
BTBR T+ Itpr3tf/J m 27.3092 0.4539 28.2005 26.4179
BUB/BnJ f 21.626 0.4143 22.4396 20.8124
BUB/BnJ m 24.918 0.5075 25.9145 23.9215
C3H/HeJ f 16.938 0.4539 17.8293 16.0467
C3H/HeJ m 22.3892 0.4539 23.2805 21.4979
C57BL/10J f 16.9959 0.4784 17.9354 16.0564
C57BL/10J m 22.5776 0.4143 23.3912 21.7639
C57BL/6J f 16.4471 0.4539 17.3384 15.5558
C57BL/6J m 20.6869 0.4539 21.5782 19.7956
C57BLKS/J f 16.3853 0.4143 17.199 15.5717
C57BLKS/J m 19.5227 0.4539 20.414 18.6314
C57BR/cdJ f 17.6649 0.4143 18.4786 16.8513
C57BR/cdJ m 23.2892 0.4539 24.1805 22.3979
C57L/J f 16.262 0.4539 17.1533 15.3707
C57L/J m 22.5276 0.4539 23.4189 21.6363
C58/J f 18.7986 0.4328 19.6484 17.9488
C58/J m 21.2096 0.4784 22.1491 20.2701
CAST/EiJ f 11.5051 0.4784 12.4446 10.5656
CAST/EiJ m 14.2668 0.5075 15.2632 13.2703
CBA/J f 18.724 0.4539 19.6153 17.8327
CBA/J m 25.3023 0.5075 26.2987 24.3058
CZECHII/EiJ f 10.4726 0.3588 11.1772 9.7679
CZECHII/EiJ m 12.0565 0.4328 12.9063 11.2066
DBA/1J f 17.0033 0.4143 17.817 16.1897
DBA/1J m 19.8653 0.5425 20.9306 18.8
DBA/2J f 19.6581 0.4784 20.5976 18.7186
DBA/2J m 23.5546 0.4784 24.4941 22.6151
FVB/NJ f 16.479 0.4784 17.4185 15.5395
FVB/NJ m 24.3443 0.4539 25.2356 23.453
I/LnJ f 16.1688 0.4784 17.1083 15.2293
I/LnJ m 20.191 0.4143 21.0046 19.3774
JF1/MsJ f 13.5213 0.4539 14.4126 12.63
JF1/MsJ m 17.0757 0.5425 18.141 16.0104
KK/HlJ f 20.9499 0.5075 21.9464 19.9534
KK/HlJ m 23.5499 0.4784 24.4894 22.6104
LP/J f 16.6269 0.4784 17.5664 15.6874
LP/J m 21.5571 0.4784 22.4966 20.6176
MA/MyJ f 16.5729 0.4784 17.5124 15.6334
MA/MyJ m 20.327 0.4539 21.2183 19.4357
MOLF/EiJ f 11.2266 0.5425 12.2919 10.1613
MOLF/EiJ m 13.5569 0.5425 14.6222 12.4916
MSM/MsJ f 9.1684 0.5075 10.1649 8.1719
MSM/MsJ m 11.0036 0.4143 11.8172 10.1899
NOD/ShiLtJ f 19.8702 0.3706 20.5979 19.1425
NOD/ShiLtJ m 23.0444 0.5075 24.0409 22.0479
NON/ShiLtJ f 21.6531 0.4539 22.5444 20.7618
NON/ShiLtJ m 22.9753 0.4539 23.8666 22.084
NZW/LacJ f 20.4683 0.4539 21.3596 19.577
NZW/LacJ m 26.3598 0.4539 27.2511 25.4685
PERA/EiJ f 16.6836 0.4784 17.6231 15.7441
PERA/EiJ m 20.3316 0.4784 21.2711 19.3921
SEA/GnJ f 18.9961 0.4784 19.9356 18.0566
SEA/GnJ m 20.7427 0.4539 21.634 19.8514
SJL/J f 16.1397 0.4784 17.0792 15.2002
SJL/J m 20.0119 0.3706 20.7396 19.2841
SM/J f 12.8319 0.4784 13.7714 11.8924
SM/J m 19.4596 0.4784 20.3991 18.5201
SPRET/EiJ f 14.012 0.7177 15.4213 12.6027
SPRET/EiJ m 13.7775 0.586 14.9282 12.6268
SWR/J f 18.3681 0.4539 19.2594 17.4768
SWR/J m 21.35 0.4539 22.2413 20.4587
WSB/EiJ f 10.8064 0.5075 11.8029 9.8099
WSB/EiJ m 13.0019 0.4784 13.9414 12.0624


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.0271 0.3404 18.6956 17.3587
A/J both 16.6507 0.3209 17.281 16.0205
AKR/J both 24.2487 0.2427 24.7254 23.7721
BALB/cJ both 20.2781 0.3297 20.9257 19.6306
BTBR T+ Itpr3tf/J both 25.1707 0.3209 25.801 24.5405
BUB/BnJ both 23.272 0.3276 23.9152 22.6288
C3H/HeJ both 19.6636 0.3209 20.2938 19.0334
C57BL/10J both 19.7867 0.3165 20.4082 19.1653
C57BL/6J both 18.567 0.3209 19.1972 17.9368
C57BLKS/J both 17.954 0.3073 18.5574 17.3506
C57BR/cdJ both 20.4771 0.3073 21.0805 19.8737
C57L/J both 19.3948 0.3209 20.025 18.7646
C58/J both 20.0041 0.3226 20.6375 19.3707
CAST/EiJ both 12.8859 0.3487 13.5707 12.2012
CBA/J both 22.0131 0.3404 22.6816 21.3447
CZECHII/EiJ both 11.2645 0.2811 11.8165 10.7125
DBA/1J both 18.4343 0.3413 19.1045 17.7641
DBA/2J both 21.6063 0.3383 22.2707 20.942
FVB/NJ both 20.4116 0.3297 21.0592 19.7641
I/LnJ both 18.1799 0.3165 18.8013 17.5585
JF1/MsJ both 15.2985 0.3537 15.993 14.604
KK/HlJ both 22.2499 0.3487 22.9347 21.5651
LP/J both 19.092 0.3383 19.7563 18.4277
MA/MyJ both 18.4499 0.3297 19.0975 17.8024
MOLF/EiJ both 12.3917 0.3836 13.145 11.6384
MSM/MsJ both 10.086 0.3276 10.7292 9.4427
NOD/ShiLtJ both 21.4573 0.3142 22.0743 20.8403
NON/ShiLtJ both 22.3142 0.3209 22.9444 21.684
NZW/LacJ both 23.414 0.3209 24.0443 22.7838
PERA/EiJ both 18.5076 0.3383 19.1719 17.8432
SEA/GnJ both 19.8694 0.3297 20.5169 19.2219
SJL/J both 18.0758 0.3026 18.67 17.4816
SM/J both 16.1457 0.3383 16.8101 15.4814
SPRET/EiJ both 13.8947 0.4632 14.8044 12.9851
SWR/J both 19.859 0.3209 20.4893 19.2288
WSB/EiJ both 11.9041 0.3487 12.5889 11.2194




  GWAS USING LINEAR MIXED MODELS