Project measure / variable:   Project1195   lightdark_latency__centroid__dark__s

ID, description, units MPD:130077   lightdark_latency__centroid__dark__s   lightdark_latency__centroid__dark__s    
Data set, strains Project1195   other   10 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1195 - lightdark_latency__centroid__dark__s



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means11.123   None 11.258   None
Median of the strain means10.122   None 8.0038   None
SD of the strain means± 7.288 ± 10.297
Coefficient of variation (CV)0.6552 0.9147
Min–max range of strain means2.524   –   24.2   None 2.424   –   33.812   None
Mean sample size per strain10.7   mice 10.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1169.1123 1169.1123 1.7035 0.1934
strain 9 12719.9501 1413.3278 2.0594 0.035
sex:strain 9 5163.518 573.7242 0.836 0.5838
Residuals 194 133140.9421 686.2935


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C57BL/6J f 16.902 32.334   21 7.0558 1.913 0.79
C57BL/6J m 33.812 57.54   22 12.268 1.7019 2.19
GAIA/NachJ f 7.132 13.919   10 4.4015 1.9516 -0.55
GAIA/NachJ m 4.8907 9.3583   15 2.4163 1.9135 -0.62
GAIC/NachJ f 16.873 11.488   3 6.6329 0.6809 5.88, 28.8 0.79
GAIC/NachJ m 4.235 5.5932   2   3.955 1.3207 0.28, 8.19 -0.68
MANB/NachJ f 4.2427 7.7744   11 2.3441 1.8324 -0.94
MANB/NachJ m 8.662 16.1   10 5.0913 1.8587 -0.25
MANE/NachJ f 2.524 4.6314   5 2.0712 1.8349 -1.18
MANE/NachJ m 2.424 5.3589   5 2.3966 2.2108 -0.86
MANF/NachJ f 10.285 17.286   20 3.8652 1.6807 -0.12
MANF/NachJ m 8.3675 10.448   12 3.0161 1.2487 -0.28
SARA/NachJ f 24.2 18.047   4 9.0234 0.7457 8.42, 44.51 1.79
SARA/NachJ m 10.531 22.777   10 7.2027 2.1629 -0.07
SARB/NachJ f 2.6157 6.9205   7 2.6157 2.6458 -1.17
SARB/NachJ m 5.9118 9.6948   11 2.9231 1.6399 -0.52
SARC/NachJ f 9.9589 16.709   19 3.8333 1.6778 -0.16
SARC/NachJ m 26.106 31.508   17 7.6417 1.2069 1.44
TUCB/NachJ f 16.501 15.854   7 5.9923 0.9608 0.74
TUCB/NachJ m 7.64 7.8501   3 4.5323 1.0275 0.03, 15.71 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 4.2427272727 7.898754308 19.8211839423 -11.3357293968
129S1/SvImJ 2 8.662 8.2842834078 25.0008231959 -7.6768231959
A/J 1 2.524 11.7157459498 25.6305853568 -20.5825853568
A/J 2 2.424 11.7157459498 25.5305853568 -20.6825853568
BALB/cJ 1 10.285 5.8578729749 21.8382926784 -1.2682926784
BALB/cJ 2 8.3675 7.562481492 23.2827367124 -6.5477367124
BTBR T+ Itpr3tf/J 1 7.132 8.2842834078 23.4708231959 -9.2068231959
BTBR T+ Itpr3tf/J 2 4.8906666667 6.7640890779 18.2312599425 -8.4499266091
C3H/HeJ 1 24.2 13.0986021755 50.0339477929 -1.6339477929
C3H/HeJ 2 10.531 8.2842834078 26.8698231959 -5.8078231959
C57BL/6J 1 16.5014285714 9.9016125368 36.030057498 -3.0272003551
C57BL/6J 2 7.64 15.124962984 37.4704734249 -22.1904734249
CAST/EiJ 1 16.8733333333 15.124962984 46.7038067582 -12.9571400915
CAST/EiJ 2 4.235 18.5242208447 40.7697193383 -32.2997193383
DBA/2J 1 2.6157142857 9.9016125368 22.1443432123 -16.9129146408
DBA/2J 2 5.9118181818 7.898754308 21.4902748514 -9.6666384877
FVB/NJ 1 9.9589473684 6.0100508615 21.8123755518 -1.8944808149
FVB/NJ 2 26.1058823529 6.3537553315 38.6371877031 13.5745770028
LP/J 1 16.9019047619 5.7166986635 28.1767639296 5.6270455943
LP/J 2 33.8118181818 5.5852627341 44.8274505333 22.7961858304


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.4523636364 5.7231912252 17.7400278725 -4.8353005998
A/J both 2.474 8.2842834078 18.8128231959 -13.8648231959
BALB/cJ both 9.32625 4.7829332555 18.7594739704 -0.1069739704
BTBR T+ Itpr3tf/J both 6.0113333333 5.3474819456 16.5579983557 -4.535331689
C3H/HeJ both 17.3655 7.7492375517 32.6490696255 2.0819303745
C57BL/6J both 12.0707142857 9.0388942368 29.8978319194 -5.756403348
CAST/EiJ both 10.5541666667 11.9573331388 34.1372265926 -13.0288932593
DBA/2J both 4.2637662338 6.3330926578 16.7543192635 -8.226786796
FVB/NJ both 18.0324148607 4.3729543266 26.6570507005 9.4077790209
LP/J both 25.3568614719 3.9961169721 33.2382732323 17.4754497114




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA