Project measure / variable:   Flaherty1   boli

ID, description, units MPD:11818   boli   total number fecal boli   [n]  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - total number fecal boli



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means2.79   n 2.87   n
Median of the strain means2.73   n 3.12   n
SD of the strain means± 1.85 ± 1.82
Coefficient of variation (CV)0.662 0.635
Min–max range of strain means0.105   –   5.05   n 0.250   –   5.50   n
Mean sample size per strain19.6   mice 19.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3686 0.3686 0.1444 0.7042
strain 7 897.1359 128.1623 50.1923 < 0.0001
sex:strain 7 25.7554 3.6793 1.4409 0.1885
Residuals 296 755.8138 2.5534


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.6 1.5   20 0.336 0.577 -0.1
129S1/SvImJ m 2.75 1.52   20 0.339 0.552 -0.06
A/J f 4.7 1.72   20 0.385 0.366 2.0, 8.0 1.03
A/J m 4.7 1.72   20 0.385 0.366 1.0, 9.0 1.01
BALB/cByJ f 5.05 2.68   20 0.6 0.532 1.22
BALB/cByJ m 5.5 2.09   20 0.467 0.38 3.0, 9.0 1.45
C3H/HeJ f 1.05 1.05   20 0.235 1.0 -0.94
C3H/HeJ m 1.76 1.64   17 0.398 0.93 -0.61
C57BL/6J f 1.44 1.25   18 0.294 0.863 -0.73
C57BL/6J m 0.895 1.05   19 0.241 1.17 -1.08
CBA/J f 2.85 1.46   20 0.327 0.513 0.03
CBA/J m 3.58 1.61   19 0.369 0.45 1.0, 8.0 0.39
DBA/2J f 4.55 1.76   20 0.394 0.387 1.0, 9.0 0.95
DBA/2J m 3.5 1.99   20 0.444 0.568 1.0, 8.0 0.35
FVB/NJ f 0.105 0.315   19 0.0723 3.0 -1.45
FVB/NJ m 0.25 0.444   20 0.0993 1.78 -1.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.6 0.3573 3.3032 1.8968
129S1/SvImJ m 2.75 0.3573 3.4532 2.0468
A/J f 4.7 0.3573 5.4032 3.9968
A/J m 4.7 0.3573 5.4032 3.9968
BALB/cByJ f 5.05 0.3573 5.7532 4.3468
BALB/cByJ m 5.5 0.3573 6.2032 4.7968
C3H/HeJ f 1.05 0.3573 1.7532 0.3468
C3H/HeJ m 1.7647 0.3876 2.5274 1.002
C57BL/6J f 1.4444 0.3766 2.1857 0.7032
C57BL/6J m 0.8947 0.3666 1.6162 0.1733
CBA/J f 2.85 0.3573 3.5532 2.1468
CBA/J m 3.5789 0.3666 4.3004 2.8575
DBA/2J f 4.55 0.3573 5.2532 3.8468
DBA/2J m 3.5 0.3573 4.2032 2.7968
FVB/NJ f 0.1053 0.3666 0.8267 0.0
FVB/NJ m 0.25 0.3573 0.9532 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.675 0.2527 3.1722 2.1778
A/J both 4.7 0.2527 5.1972 4.2028
BALB/cByJ both 5.275 0.2527 5.7722 4.7778
C3H/HeJ both 1.4074 0.2636 1.9261 0.8886
C57BL/6J both 1.1696 0.2628 1.6868 0.6524
CBA/J both 3.2145 0.256 3.7182 2.7107
DBA/2J both 4.025 0.2527 4.5222 3.5278
FVB/NJ both 0.1776 0.256 0.6814 0.0




  GWAS USING LINEAR MIXED MODELS