Project measure / variable:   Flaherty1   pct_close3

ID, description, units MPD:11816   pct_close3   percentage of time in closed quadrants   [%]  q3  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - percentage of time in closed quadrants q3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means15.2   % 15.7   %
Median of the strain means15.1   % 16.1   %
SD of the strain means± 6.15 ± 5.54
Coefficient of variation (CV)0.404 0.354
Min–max range of strain means8.37   –   27.2   % 6.66   –   24.1   %
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.2562 17.2562 0.054 0.8164
strain 7 9130.8769 1304.411 4.0831 0.0003
sex:strain 7 445.656 63.6651 0.1993 0.9855
Residuals 301 96158.1507 319.4623


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.2 18.6   20 4.16 1.67 -0.65
129S1/SvImJ m 11.1 15.4   20 3.44 1.39 -0.82
A/J f 8.37 25.8   20 5.77 3.09 -1.11
A/J m 6.66 20.5   20 4.58 3.08 -1.63
BALB/cByJ f 8.8 23.2   20 5.19 2.64 -1.04
BALB/cByJ m 12.6 24.5   20 5.48 1.95 -0.55
C3H/HeJ f 17.4 18.1   20 4.04 1.04 0.36
C3H/HeJ m 17.2 16.1   19 3.69 0.934 0.28
C57BL/6J f 27.2 17.1   20 3.83 0.63 1.95
C57BL/6J m 24.1 16.0   20 3.57 0.663 1.52
CBA/J f 14.5 15.3   20 3.42 1.06 -0.12
CBA/J m 18.5 18.1   19 4.16 0.979 0.51
DBA/2J f 15.6 17.3   20 3.88 1.11 0.06
DBA/2J m 14.9 12.6   20 2.82 0.847 -0.14
FVB/NJ f 18.6 8.59   19 1.97 0.462 0.55
FVB/NJ m 20.3 7.6   20 1.7 0.374 6.23, 44.3 0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.16 3.9966 19.0249 3.2951
129S1/SvImJ m 11.09 3.9966 18.9549 3.2251
A/J f 8.365 3.9966 16.2299 0.5001
A/J m 6.655 3.9966 14.5199 0.0
BALB/cByJ f 8.7985 3.9966 16.6634 0.9336
BALB/cByJ m 12.5517 3.9966 20.4165 4.6868
C3H/HeJ f 17.3967 3.9966 25.2615 9.5318
C3H/HeJ m 17.2016 4.1005 25.2708 9.1324
C57BL/6J f 27.1785 3.9966 35.0434 19.3136
C57BL/6J m 24.0785 3.9966 31.9434 16.2136
CBA/J f 14.457 3.9966 22.3219 6.5921
CBA/J m 18.5284 4.1005 26.5976 10.4592
DBA/2J f 15.5735 3.9966 23.4384 7.7086
DBA/2J m 14.8735 3.9966 22.7384 7.0086
FVB/NJ f 18.5858 4.1005 26.655 10.5166
FVB/NJ m 20.3215 3.9966 28.1864 12.4566


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.125 2.826 16.6863 5.5637
A/J both 7.51 2.826 13.0713 1.9487
BALB/cByJ both 10.6751 2.826 16.2364 5.1138
C3H/HeJ both 17.2991 2.863 22.9331 11.6651
C57BL/6J both 25.6285 2.826 31.1898 20.0672
CBA/J both 16.4927 2.863 22.1267 10.8587
DBA/2J both 15.2235 2.826 20.7848 9.6622
FVB/NJ both 19.4536 2.863 25.0877 13.8196




  GWAS USING LINEAR MIXED MODELS