Project measure / variable:   Flaherty1   pct_open2

ID, description, units MPD:11815   pct_open2   percentage of time in open quadrants   [%]  q2  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - percentage of time in open quadrants q2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means8.55   % 7.71   %
Median of the strain means8.07   % 5.92   %
SD of the strain means± 4.61 ± 5.17
Coefficient of variation (CV)0.538 0.670
Min–max range of strain means1.87   –   15.6   % 2.47   –   18.2   %
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 53.9549 53.9549 0.8754 0.3502
strain 7 6257.3227 893.9032 14.5031 < 0.0001
sex:strain 7 385.9009 55.1287 0.8944 0.5111
Residuals 301 18552.1953 61.6352


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.22 17.2   20 3.85 2.09 -0.07
129S1/SvImJ m 5.98 5.76   20 1.29 0.963 -0.33
A/J f 1.87 3.83   20 0.856 2.04 -1.45
A/J m 2.47 4.62   20 1.03 1.87 -1.01
BALB/cByJ f 7.47 15.2   20 3.4 2.03 -0.24
BALB/cByJ m 3.06 4.42   20 0.988 1.44 -0.9
C3H/HeJ f 12.3 7.26   20 1.62 0.591 1.73, 25.5 0.81
C3H/HeJ m 10.8 7.89   19 1.81 0.729 0.133, 28.6 0.6
C57BL/6J f 7.91 6.12   20 1.37 0.773 0.7, 24.6 -0.14
C57BL/6J m 5.85 2.51   20 0.561 0.428 0.433, 11.0 -0.36
CBA/J f 11.8 7.54   20 1.69 0.639 0.7
CBA/J m 10.1 8.0   19 1.83 0.788 0.46
DBA/2J f 3.27 2.55   20 0.569 0.778 -1.15
DBA/2J m 5.23 4.72   20 1.05 0.902 -0.48
FVB/NJ f 15.6 5.32   19 1.22 0.341 6.13, 24.0 1.53
FVB/NJ m 18.2 5.74   20 1.28 0.315 8.73, 33.5 2.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.2215 1.7555 11.6761 4.7669
129S1/SvImJ m 5.9831 1.7555 9.4377 2.5286
A/J f 1.8734 1.7555 5.328 0.0
A/J m 2.4657 1.7555 5.9203 0.0
BALB/cByJ f 7.4733 1.7555 10.9279 4.0187
BALB/cByJ m 3.06 1.7555 6.5146 0.0
C3H/HeJ f 12.28 1.7555 15.7346 8.8254
C3H/HeJ m 10.8265 1.8011 14.3708 7.2821
C57BL/6J f 7.915 1.7555 11.3696 4.4604
C57BL/6J m 5.8541 1.7555 9.3087 2.3996
CBA/J f 11.802 1.7555 15.2566 8.3474
CBA/J m 10.1491 1.8011 13.6934 6.6048
DBA/2J f 3.2725 1.7555 6.7271 0.0
DBA/2J m 5.2318 1.7555 8.6864 1.7773
FVB/NJ f 15.5979 1.8011 19.1422 12.0536
FVB/NJ m 18.19 1.7555 21.6446 14.7354


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.1023 1.2413 9.5451 4.6595
A/J both 2.1695 1.2413 4.6123 0.0
BALB/cByJ both 5.2667 1.2413 7.7094 2.8239
C3H/HeJ both 11.5532 1.2575 14.0279 9.0785
C57BL/6J both 6.8846 1.2413 9.3273 4.4418
CBA/J both 10.9756 1.2575 13.4503 8.5009
DBA/2J both 4.2522 1.2413 6.6949 1.8094
FVB/NJ both 16.8939 1.2575 19.3686 14.4192




  GWAS USING LINEAR MIXED MODELS