Project measure / variable:   Flaherty1   pct_close1

ID, description, units MPD:11814   pct_close1   percentage of time in closed quadrants   [%]  q1  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - percentage of time in closed quadrants q1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means66.8   % 67.6   %
Median of the strain means67.7   % 69.2   %
SD of the strain means± 14.0 ± 14.6
Coefficient of variation (CV)0.209 0.215
Min–max range of strain means50.0   –   86.2   % 45.3   –   87.1   %
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 60.6431 60.6431 0.109 0.7415
strain 7 55616.6343 7945.2335 14.2852 < 0.0001
sex:strain 7 801.3611 114.4802 0.2058 0.984
Residuals 301 167412.556 556.1879


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 75.7 30.2   20 6.76 0.399 23.3, 100.0 0.64
129S1/SvImJ m 79.5 22.5   20 5.02 0.283 33.4, 99.7 0.82
A/J f 86.2 26.8   20 6.0 0.311 2.37, 100.0 1.39
A/J m 87.1 25.9   20 5.79 0.297 10.7, 100.0 1.34
BALB/cByJ f 78.4 27.5   20 6.16 0.351 0.83
BALB/cByJ m 78.5 28.5   20 6.38 0.363 3.07, 100.0 0.75
C3H/HeJ f 50.4 25.7   20 5.75 0.51 18.9, 93.2 -1.17
C3H/HeJ m 54.3 25.9   19 5.94 0.476 6.43, 99.9 -0.91
C57BL/6J f 57.7 20.8   20 4.64 0.36 25.4, 96.5 -0.65
C57BL/6J m 63.2 17.1   20 3.82 0.27 32.1, 95.5 -0.3
CBA/J f 59.6 27.3   20 6.11 0.459 10.0, 97.4 -0.51
CBA/J m 57.9 22.8   19 5.23 0.394 24.7, 99.2 -0.67
DBA/2J f 76.2 22.7   20 5.07 0.297 33.5, 100.0 0.68
DBA/2J m 75.1 16.9   20 3.77 0.225 40.3, 100.0 0.51
FVB/NJ f 50.0 14.9   19 3.41 0.298 27.2, 83.4 -1.2
FVB/NJ m 45.3 12.8   20 2.87 0.284 13.5, 76.7 -1.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 75.705 5.2735 86.0825 65.3275
129S1/SvImJ m 79.495 5.2735 89.8725 69.1175
A/J f 86.2085 5.2735 96.586 75.831
A/J m 87.065 5.2735 97.4425 76.6875
BALB/cByJ f 78.395 5.2735 88.7725 68.0175
BALB/cByJ m 78.5035 5.2735 88.881 68.126
C3H/HeJ f 50.425 5.2735 60.8025 40.0475
C3H/HeJ m 54.3489 5.4105 64.9961 43.7018
C57BL/6J f 57.71 5.2735 68.0875 47.3325
C57BL/6J m 63.21 5.2735 73.5875 52.8325
CBA/J f 59.58 5.2735 69.9575 49.2025
CBA/J m 57.9 5.4105 68.5471 47.2529
DBA/2J f 76.23 5.2735 86.6075 65.8525
DBA/2J m 75.11 5.2735 85.4875 64.7325
FVB/NJ f 49.9684 5.4105 60.6155 39.3213
FVB/NJ m 45.27 5.2735 55.6475 34.8925


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 77.6 3.7289 84.938 70.262
A/J both 86.6367 3.7289 93.9748 79.2987
BALB/cByJ both 78.4492 3.7289 85.7873 71.1112
C3H/HeJ both 52.387 3.7776 59.8209 44.953
C57BL/6J both 60.46 3.7289 67.798 53.122
CBA/J both 58.74 3.7776 66.1739 51.3061
DBA/2J both 75.67 3.7289 83.008 68.332
FVB/NJ both 47.6192 3.7776 55.0532 40.1853




  GWAS USING LINEAR MIXED MODELS