Project measure / variable:   Schoonjans1   subcut_adip_wt_HFD

ID, description, units MPD:112862   subcut_adip_wt_HFD   subcutaneous adipose tissue weight   [g]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - subcutaneous adipose tissue weight HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means2.1035   g
Median of the strain means2.0857   g
SD of the strain means± 0.87601
Coefficient of variation (CV)0.4164
Min–max range of strain means0.67572   –   3.9847   g
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 116.2848 3.3224 6.7127 < 0.0001
Residuals 141 69.787 0.4949


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 1.62 0.66049   5 0.29538 0.4077 0.89, 2.43 -0.55
BXD100 m 2.2106 1.6287   7 0.61558 0.7368 0.5, 4.0019 0.12
BXD11 m 3.9847 0.5679   3 0.32788 0.1425 3.34, 4.411 2.15
BXD12 m 0.73275 0.13012   4 0.06506 0.1776 0.6, 0.91 -1.56
BXD27 m 1.3448 0.42169   5 0.18859 0.3136 0.8417, 1.6908 -0.87
BXD32 m 1.785 0.74371   4 0.37185 0.4166 0.71, 2.36 -0.36
BXD34 m 1.2075 0.86226   4 0.43113 0.7141 0.47, 2.28 -1.02
BXD39 m 1.7799 0.31177   5 0.13943 0.1752 1.25, 2.0505 -0.37
BXD40 m 2.1997 0.26887   5 0.12024 0.1222 1.9274, 2.6455 0.11
BXD43 m 1.284 0.23093   5 0.10328 0.1799 0.98, 1.54 -0.94
BXD45 m 2.85 0.6722   5 0.30062 0.2359 2.07, 3.57 0.85
BXD48 m 2.9243 0.52287   5 0.23383 0.1788 2.3378, 3.5705 0.94
BXD48a m 3.3838 0.72668   5 0.32498 0.2148 2.412, 4.443 1.46
BXD49 m 1.1226 0.66493   5 0.29736 0.5923 0.302, 2.1245 -1.12
BXD51 m 3.422 1.1077   5 0.49538 0.3237 1.6, 4.5 1.51
BXD53 m 1.8027 0.12445   5 0.05566 0.069 1.6583, 1.9938 -0.34
BXD55 m 1.4968 0.49356   5 0.22073 0.3298 0.7492, 1.935 -0.69
BXD6 m 2.732 0.82026   5 0.36683 0.3002 1.33, 3.31 0.72
BXD62 m 1.4589 0.17932   5 0.0802 0.1229 1.2756, 1.7297 -0.74
BXD63 m 2.5957 0.72229   5 0.32302 0.2783 2.0495, 3.8412 0.56
BXD64 m 2.218 0.97312   5 0.43519 0.4387 1.29, 3.62 0.13
BXD66 m 2.3131 1.2575   9 0.41918 0.5437 0.53, 4.1962 0.24
BXD67 m 2.9 0.69127   5 0.30914 0.2384 2.2, 3.74 0.91
BXD69 m 1.412 0.22554   5 0.10087 0.1597 1.21, 1.69 -0.79
BXD73 m 1.4061 0.18932   5 0.08466 0.1346 1.1379, 1.619 -0.8
BXD75 m 2.4631 0.32127   4 0.16064 0.1304 2.1086, 2.7939 0.41
BXD77 m 1.4442 0.24296   5 0.10866 0.1682 1.1247, 1.697 -0.75
BXD79 m 1.9717 0.30232   5 0.1352 0.1533 1.6747, 2.3708 -0.15
BXD8 m 0.67652 0.55835   4 0.27918 0.8253 0.334, 1.5106 -1.63
BXD81 m 2.5731 0.34815   5 0.1557 0.1353 2.1494, 3.0598 0.54
BXD84 m 3.27 1.1539   5 0.51602 0.3529 2.5, 5.28 1.33
BXD87 m 0.67572 0.37284   5 0.16674 0.5518 0.3118, 1.2493 -1.63
BXD89 m 1.4618 0.45267   5 0.20244 0.3097 0.748, 1.82 -0.73
BXD90 m 3.8561 0.16591   3 0.09579 0.043 3.7301, 4.0441 2.0
C57BL/6J m 2.4566 0.15726   5 0.07033 0.064 2.1954, 2.622 0.4
DBA/2J m 2.692 0.32453   5 0.14513 0.1206 2.38, 3.1 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.62 0.3146246327 2.2419913434 0.9980086566
BXD100 m 2.2105857143 0.2659063469 2.7362643446 1.684907084
BXD11 m 3.9846666667 0.4061786542 4.7876540382 3.1816792951
BXD12 m 0.73275 0.351761033 1.4281574627 0.0373425373
BXD27 m 1.34478 0.3146246327 1.9667713434 0.7227886566
BXD32 m 1.785 0.351761033 2.4804074627 1.0895925373
BXD34 m 1.2075 0.351761033 1.9029074627 0.5120925373
BXD39 m 1.77988 0.3146246327 2.4018713434 1.1578886566
BXD40 m 2.19972 0.3146246327 2.8217113434 1.5777286566
BXD43 m 1.284 0.3146246327 1.9059913434 0.6620086566
BXD45 m 2.85 0.3146246327 3.4719913434 2.2280086566
BXD48 m 2.9243 0.3146246327 3.5462913434 2.3023086566
BXD48a m 3.3838 0.3146246327 4.0057913434 2.7618086566
BXD49 m 1.12262 0.3146246327 1.7446113434 0.5006286566
BXD51 m 3.422 0.3146246327 4.0439913434 2.8000086566
BXD53 m 1.80274 0.3146246327 2.4247313434 1.1807486566
BXD55 m 1.49676 0.3146246327 2.1187513434 0.8747686566
BXD6 m 2.732 0.3146246327 3.3539913434 2.1100086566
BXD62 m 1.4589 0.3146246327 2.0808913434 0.8369086566
BXD63 m 2.59572 0.3146246327 3.2177113434 1.9737286566
BXD64 m 2.218 0.3146246327 2.8399913434 1.5960086566
BXD66 m 2.3130666667 0.2345073553 2.7766716418 1.8494616916
BXD67 m 2.9 0.3146246327 3.5219913434 2.2780086566
BXD69 m 1.412 0.3146246327 2.0339913434 0.7900086566
BXD73 m 1.40606 0.3146246327 2.0280513434 0.7840686566
BXD75 m 2.463125 0.351761033 3.1585324627 1.7677175373
BXD77 m 1.44424 0.3146246327 2.0662313434 0.8222486566
BXD79 m 1.97172 0.3146246327 2.5937113434 1.3497286566
BXD8 m 0.676525 0.351761033 1.3719324627 -0.0188824627
BXD81 m 2.57314 0.3146246327 3.1951313434 1.9511486566
BXD84 m 3.27 0.3146246327 3.8919913434 2.6480086566
BXD87 m 0.67572 0.3146246327 1.2977113434 0.0537286566
BXD89 m 1.4618 0.3146246327 2.0837913434 0.8398086566
BXD90 m 3.8561333333 0.4061786542 4.6591207049 3.0531459618
C57BL/6J m 2.45664 0.3146246327 3.0786313434 1.8346486566
DBA/2J m 2.692 0.3146246327 3.3139913434 2.0700086566




  GWAS USING LINEAR MIXED MODELS