Project measure / variable:   Schoonjans1   CA_liver_CD

ID, description, units MPD:112816   CA_liver_CD   bile acid cholic acid amount in liver, at 29 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid cholic acid amount in liver, at 29 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.0397   ng/mL
Median of the strain means0.01134   ng/mL
SD of the strain means± 0.07843
Coefficient of variation (CV)1.9755
Min–max range of strain means0.00492068   –   0.37011   ng/mL
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.9298 0.0266 1.9096 0.0047
Residuals 134 1.8641 0.0139


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01473 0.00421499   4 0.00210749 0.2862 0.00872128, 0.01789 -0.32
BXD100 m 0.00620868 0.00098105   6 0.00040051 0.158 0.00490991, 0.0077561 -0.43
BXD11 m 0.00708753 0.00204775   4 0.00102387 0.2889 0.00576229, 0.01008 -0.42
BXD12 m 0.13498 0.17964   4 0.08982 1.3309 0.01561, 0.39557 1.21
BXD27 m 0.02804 0.03921   4 0.0196 1.3985 0.00708504, 0.08682 -0.15
BXD32 m 0.11408 0.19181   5 0.08578 1.6813 0.00651454, 0.4546 0.95
BXD34 m 0.04329 0.02712   5 0.01213 0.6264 0.02286, 0.09013 0.05
BXD39 m 0.0070507 0.00086512   5 0.00038689 0.1227 0.00569791, 0.00808989 -0.42
BXD40 m 0.03346 0.04705   5 0.02104 1.4062 0.00412831, 0.11655 -0.08
BXD43 m 0.29602 0.50058   3 0.28901 1.691 0.00607708, 0.87404 3.27
BXD45 m 0.01269 0.00868495   4 0.00434248 0.6844 0.00581511, 0.02467 -0.34
BXD48 m 0.05951 0.10452   5 0.04674 1.7564 0.00793851, 0.24613 0.25
BXD48a m 0.00848243 0.00390499   4 0.0019525 0.4604 0.00559702, 0.01423 -0.4
BXD49 m 0.00696782 0.00144442   4 0.00072221 0.2073 0.00559372, 0.00888889 -0.42
BXD51 m 0.00894379 0.00359614   5 0.00160824 0.4021 0.00601179, 0.01353 -0.39
BXD53 m 0.01167 0.00703437   5 0.00314587 0.6025 0.00479703, 0.02261 -0.36
BXD55 m 0.02284 0.0226   5 0.01011 0.9897 0.00487575, 0.06077 -0.21
BXD6 m 0.07536 0.06348   5 0.02839 0.8424 0.01446, 0.15148 0.45
BXD62 m 0.00557925 0.00107807   5 0.00048213 0.1932 0.00462245, 0.00733038 -0.44
BXD63 m 0.01204 0.00735775   5 0.00329049 0.6113 0.00466436, 0.02226 -0.35
BXD64 m 0.01225 0.00508825   3 0.0029377 0.4153 0.00681548, 0.0169 -0.35
BXD66 m 0.01045 0.0047261   7 0.0017863 0.4523 0.00633166, 0.02016 -0.37
BXD67 m 0.00858278 0.00357233   4 0.00178617 0.4162 0.00506958, 0.01338 -0.4
BXD69 m 0.00531092 0.00073128   5 0.00032704 0.1377 0.00465361, 0.00653465 -0.44
BXD73 m 0.01119 0.00355695   5 0.00159072 0.3178 0.00725807, 0.01699 -0.36
BXD75 m 0.00492068 0.00036188   5 0.00016184 0.0735 0.00438, 0.00533333 -0.44
BXD77 m 0.01323 0.01157   5 0.00517528 0.8749 0.00603604, 0.03318 -0.34
BXD79 m 0.0105 0.00235252   5 0.00105208 0.224 0.00687812, 0.01268 -0.37
BXD8 m 0.00909774 0.00179515   5 0.00080281 0.1973 0.00735148, 0.01164 -0.39
BXD81 m 0.00998297 0.00736813   4 0.00368407 0.7381 0.00510183, 0.02088 -0.38
BXD84 m 0.00927929 0.00447807   5 0.00200265 0.4826 0.00589178, 0.01695 -0.39
BXD87 m 0.37011 0.50941   5 0.22781 1.3764 0.03558, 1.239 4.21
BXD89 m 0.01668 0.01156   5 0.00517101 0.6934 0.00680459, 0.03453 -0.29
BXD90 m 0.0104 0.00511393   5 0.00228702 0.4917 0.00587278, 0.01894 -0.37
C57BL/6J m 0.01149 0.00613483   5 0.00274358 0.534 0.00605882, 0.02118 -0.36
DBA/2J m 0.00668124 0.00219535   5 0.00098179 0.3286 0.00438302, 0.00915663 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01472782 0.0589730461 0.1313662295 -0.1019105895
BXD100 m 0.0062086783 0.0481512905 0.1014435409 -0.0890261843
BXD11 m 0.007087535 0.0589730461 0.1237259445 -0.1095508745
BXD12 m 0.13498 0.0589730461 0.2516184095 0.0183415905
BXD27 m 0.0280355575 0.0589730461 0.144673967 -0.088602852
BXD32 m 0.114082908 0.0527470959 0.218407473 0.009758343
BXD34 m 0.04329 0.0527470959 0.147614565 -0.061034565
BXD39 m 0.007050698 0.0527470959 0.111375263 -0.097273867
BXD40 m 0.033461662 0.0527470959 0.137786227 -0.070862903
BXD43 m 0.29602458 0.068096208 0.4307070143 0.1613421457
BXD45 m 0.012690205 0.0589730461 0.1293286145 -0.1039482045
BXD48 m 0.059511642 0.0527470959 0.163836207 -0.044812923
BXD48a m 0.008482435 0.0589730461 0.1251208445 -0.1081559745
BXD49 m 0.0069678225 0.0589730461 0.123606232 -0.109670587
BXD51 m 0.008943786 0.0527470959 0.113268351 -0.095380779
BXD53 m 0.011674802 0.0527470959 0.115999367 -0.092649763
BXD55 m 0.02283715 0.0527470959 0.127161715 -0.081487415
BXD6 m 0.075356 0.0527470959 0.179680565 -0.028968565
BXD62 m 0.005579252 0.0527470959 0.109903817 -0.098745313
BXD63 m 0.012036146 0.0527470959 0.116360711 -0.092288419
BXD64 m 0.0122518267 0.068096208 0.146934261 -0.1224306076
BXD66 m 0.01044842 0.0445794326 0.09861877 -0.07772193
BXD67 m 0.008582785 0.0589730461 0.1252211945 -0.1080556245
BXD69 m 0.005310922 0.0527470959 0.109635487 -0.099013643
BXD73 m 0.011193614 0.0527470959 0.115518179 -0.093130951
BXD75 m 0.00492068 0.0527470959 0.109245245 -0.099403885
BXD77 m 0.013226756 0.0527470959 0.117551321 -0.091097809
BXD79 m 0.010503624 0.0527470959 0.114828189 -0.093820941
BXD8 m 0.009097744 0.0527470959 0.113422309 -0.095226821
BXD81 m 0.0099829725 0.0589730461 0.126621382 -0.106655437
BXD84 m 0.009279292 0.0527470959 0.113603857 -0.095045273
BXD87 m 0.370106 0.0527470959 0.474430565 0.265781435
BXD89 m 0.016675874 0.0527470959 0.121000439 -0.087648691
BXD90 m 0.010400196 0.0527470959 0.114724761 -0.093924369
C57BL/6J m 0.011487804 0.0527470959 0.115812369 -0.092836761
DBA/2J m 0.006681242 0.0527470959 0.111005807 -0.097643323




  GWAS USING LINEAR MIXED MODELS