Project measure / variable:   Schoonjans1   GCA_feces_CD

ID, description, units MPD:112770   GCA_feces_CD   bile acid glycocholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycocholic acid amount in feces, at 24 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.01096   ng/mL
Median of the strain means0.01086   ng/mL
SD of the strain means± 0.0040816
Coefficient of variation (CV)0.3725
Min–max range of strain means0.00440178   –   0.02013   ng/mL
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0027 0.0001 2.9619 < 0.0001
Residuals 135 0.0036 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01685 0.00323518   5 0.00144682 0.192 0.0145, 0.02236 1.44
BXD100 m 0.02013 0.00229744   5 0.00102745 0.1141 0.01753, 0.02238 2.25
BXD11 m 0.01393 0.00374199   4 0.00187099 0.2686 0.01082, 0.01876 0.73
BXD12 m 0.0117 0.00287836   4 0.00143918 0.246 0.0097664, 0.01598 0.18
BXD27 m 0.01789 0.0054399   4 0.00271995 0.3041 0.01287, 0.02497 1.7
BXD32 m 0.00967338 0.00118423   4 0.00059212 0.1224 0.00888554, 0.01143 -0.31
BXD34 m 0.01006 0.00243421   4 0.00121711 0.242 0.0081454, 0.01354 -0.22
BXD39 m 0.00831863 0.0027508   5 0.00123019 0.3307 0.00628982, 0.01309 -0.65
BXD40 m 0.00937629 0.00233076   5 0.00104235 0.2486 0.00686246, 0.01242 -0.39
BXD43 m 0.00633247 0.00084674   4 0.00042337 0.1337 0.00516418, 0.00704854 -1.13
BXD45 m 0.01734 0.02124   3 0.01226 1.2248 0.00427507, 0.04184 1.56
BXD48 m 0.01078 0.00237564   5 0.00106242 0.2203 0.00824128, 0.01359 -0.04
BXD48a m 0.01457 0.00711614   4 0.00355807 0.4884 0.00522439, 0.02129 0.89
BXD49 m 0.0099538 0.00251752   5 0.00112587 0.2529 0.00813908, 0.01401 -0.25
BXD51 m 0.01648 0.00436404   5 0.00195166 0.2648 0.0125, 0.02368 1.35
BXD53 m 0.00610139 0.00084253   5 0.00037679 0.1381 0.00487216, 0.00696482 -1.19
BXD55 m 0.00989644 0.00175082   5 0.00078299 0.1769 0.00831712, 0.01287 -0.26
BXD6 m 0.01118 0.00191408   5 0.000856 0.1712 0.00957386, 0.01353 0.05
BXD62 m 0.00947046 0.00224627   5 0.00100456 0.2372 0.00685358, 0.01187 -0.36
BXD63 m 0.00562032 0.00406391   5 0.00181744 0.7231 0.00171859, 0.01046 -1.31
BXD64 m 0.00673249 0.00086747   5 0.00038795 0.1288 0.00566701, 0.00802671 -1.04
BXD66 m 0.00440178 0.00296648   5 0.00132665 0.6739 0.00133267, 0.00902591 -1.61
BXD67 m 0.00533459 0.00239153   4 0.00119577 0.4483 0.00190287, 0.00708925 -1.38
BXD69 m 0.01094 0.00356992   5 0.00159652 0.3262 0.00726947, 0.01608 0.0
BXD73 m 0.01338 0.00300676   5 0.00134466 0.2248 0.00908052, 0.01582 0.59
BXD75 m 0.01428 0.00471605   5 0.00210908 0.3303 0.00930029, 0.02034 0.81
BXD77 m 0.0116 0.00102583   5 0.00045876 0.0884 0.00997006, 0.01268 0.16
BXD79 m 0.00730797 0.00249769   5 0.001117 0.3418 0.00336304, 0.01014 -0.89
BXD8 m 0.01257 0.00770442   5 0.00344552 0.6131 0.00637245, 0.02582 0.4
BXD81 m 0.00811684 0.0018326   5 0.00081956 0.2258 0.00518878, 0.00972355 -0.7
BXD84 m 0.00482518 0.00171902   5 0.00076877 0.3563 0.00299694, 0.00726912 -1.5
BXD87 m 0.01136 0.00436076   5 0.00195019 0.3839 0.00668362, 0.01716 0.1
BXD89 m 0.01384 0.00410469   5 0.00183567 0.2966 0.00901478, 0.01977 0.71
BXD90 m 0.01566 0.01739   5 0.00777686 1.1106 0.00606414, 0.04666 1.15
C57BL/6J m 0.00571009 0.00274076   6 0.00111891 0.48 0.00226608, 0.00843088 -1.29
DBA/2J m 0.01275 0.00375003   5 0.00167706 0.2941 0.00633621, 0.01548 0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.016848 0.0022961569 0.0213890918 0.0123069082
BXD100 m 0.020132 0.0022961569 0.0246730918 0.0155909082
BXD11 m 0.01393 0.0025671815 0.019007095 0.008852905
BXD12 m 0.0116991 0.0025671815 0.016776195 0.006622005
BXD27 m 0.01789 0.0025671815 0.022967095 0.012812905
BXD32 m 0.009673375 0.0025671815 0.01475047 0.00459628
BXD34 m 0.01005879 0.0025671815 0.015135885 0.004981695
BXD39 m 0.008318632 0.0022961569 0.0128597238 0.0037775402
BXD40 m 0.009376288 0.0022961569 0.0139173798 0.0048351962
BXD43 m 0.00633247 0.0025671815 0.011409565 0.001255375
BXD45 m 0.0173375433 0.0029643259 0.0232000677 0.011475019
BXD48 m 0.010782288 0.0022961569 0.0153233798 0.0062411962
BXD48a m 0.0145710975 0.0025671815 0.0196481925 0.0094940025
BXD49 m 0.009953804 0.0022961569 0.0144948958 0.0054127122
BXD51 m 0.016478 0.0022961569 0.0210190918 0.0119369082
BXD53 m 0.006101386 0.0022961569 0.0106424778 0.0015602942
BXD55 m 0.00989644 0.0022961569 0.0144375318 0.0053553482
BXD6 m 0.011179698 0.0022961569 0.0157207898 0.0066386062
BXD62 m 0.009470464 0.0022961569 0.0140115558 0.0049293722
BXD63 m 0.005620322 0.0022961569 0.0101614138 0.0010792302
BXD64 m 0.006732492 0.0022961569 0.0112735838 0.0021914002
BXD66 m 0.004401782 0.0022961569 0.0089428738 -0.0001393098
BXD67 m 0.0053345875 0.0025671815 0.0104116825 0.0002574925
BXD69 m 0.010943434 0.0022961569 0.0154845258 0.0064023422
BXD73 m 0.013378104 0.0022961569 0.0179191958 0.0088370122
BXD75 m 0.014280058 0.0022961569 0.0188211498 0.0097389662
BXD77 m 0.011602012 0.0022961569 0.0161431038 0.0070609202
BXD79 m 0.007307974 0.0022961569 0.0118490658 0.0027668822
BXD8 m 0.012565324 0.0022961569 0.0171064158 0.0080242322
BXD81 m 0.008116844 0.0022961569 0.0126579358 0.0035757522
BXD84 m 0.004825182 0.0022961569 0.0093662738 0.0002840902
BXD87 m 0.011357748 0.0022961569 0.0158988398 0.0068166562
BXD89 m 0.013836956 0.0022961569 0.0183780478 0.0092958642
BXD90 m 0.015658154 0.0022961569 0.0201992458 0.0111170622
C57BL/6J m 0.0057100867 0.0020960949 0.0098555174 0.0015646559
DBA/2J m 0.012751242 0.0022961569 0.0172923338 0.0082101502




  GWAS USING LINEAR MIXED MODELS