Project measure / variable:   Schoonjans1   DCA_feces_CD

ID, description, units MPD:112768   DCA_feces_CD   bile acid deoxycholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid deoxycholic acid amount in feces, at 24 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means17.277   ng/mL
Median of the strain means15.234   ng/mL
SD of the strain means± 11.857
Coefficient of variation (CV)0.6863
Min–max range of strain means3.1334   –   54.08   ng/mL
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 24290.8221 694.0235 15.0076 < 0.0001
Residuals 139 6428.0087 46.2447


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 21.077 6.308   5 2.821 0.2993 11.311, 27.552 0.32
BXD100 m 9.45 1.6879   5 0.75486 0.1786 6.5307, 10.568 -0.66
BXD11 m 7.9989 3.8359   4 1.918 0.4796 4.1792, 13.313 -0.78
BXD12 m 5.6982 2.5933   4 1.2967 0.4551 3.506, 9.4438 -0.98
BXD27 m 6.0341 2.4038   4 1.2019 0.3984 3.8912, 8.755 -0.95
BXD32 m 21.795 11.303   4 5.6514 0.5186 5.0762, 29.986 0.38
BXD34 m 3.1334 0.75957   4 0.37979 0.2424 2.5816, 4.2357 -1.19
BXD39 m 3.9357 0.63049   5 0.28196 0.1602 3.3313, 4.642 -1.13
BXD40 m 3.9421 0.80418   5 0.35964 0.204 2.9289, 5.1722 -1.12
BXD43 m 14.281 6.5793   4 3.2896 0.4607 10.219, 23.997 -0.25
BXD45 m 13.646 4.0687   3 2.3491 0.2982 9.3966, 17.506 -0.31
BXD48 m 26.959 7.3298   5 3.278 0.2719 18.496, 36.7 0.82
BXD48a m 11.877 3.5973   4 1.7987 0.3029 9.0649, 16.786 -0.46
BXD49 m 24.852 4.2007   5 1.8786 0.169 20.128, 30.636 0.64
BXD51 m 16.187 5.7717   5 2.5812 0.3566 9.9848, 25.408 -0.09
BXD53 m 4.1475 0.90517   5 0.4048 0.2182 3.2529, 5.5076 -1.11
BXD55 m 33.326 5.2941   5 2.3676 0.1589 28.794, 41.425 1.35
BXD6 m 6.0166 13.058   5 5.8399 2.1704 0.07843, 29.376 -0.95
BXD62 m 9.1247 2.2928   5 1.0254 0.2513 6.2799, 12.138 -0.69
BXD63 m 54.08 14.887   5 6.6578 0.2753 32.058, 69.09 3.1
BXD64 m 4.1881 0.59728   5 0.26711 0.1426 3.7318, 5.0462 -1.1
BXD66 m 10.741 1.4533   5 0.64994 0.1353 8.9563, 12.615 -0.55
BXD67 m 5.4078 1.1952   4 0.5976 0.221 3.8599, 6.5548 -1.0
BXD69 m 32.938 13.199   5 5.9028 0.4007 20.989, 48.188 1.32
BXD73 m 24.138 5.761   5 2.5764 0.2387 15.23, 31.37 0.58
BXD75 m 39.729 5.6318   5 2.5186 0.1418 30.511, 44.356 1.89
BXD77 m 12.831 3.6128   5 1.6157 0.2816 7.8183, 16.995 -0.37
BXD79 m 26.542 3.9988   5 1.7883 0.1507 20.335, 31.025 0.78
BXD8 m 5.5452 2.8448   5 1.2722 0.513 2.9292, 8.7882 -0.99
BXD81 m 21.829 12.768   5 5.7098 0.5849 0.09566, 33.231 0.38
BXD84 m 28.566 12.474   5 5.5784 0.4367 17.741, 46.223 0.95
BXD87 m 25.537 2.1362   5 0.95533 0.0836 23.493, 29.142 0.7
BXD89 m 20.009 3.7736   5 1.6876 0.1886 13.768, 22.975 0.23
BXD90 m 17.736 6.2974   5 2.8163 0.3551 9.9535, 26.758 0.04
C57BL/6J m 27.696 4.8764   10 1.5421 0.1761 20.237, 34.922 0.88
DBA/2J m 20.969 12.446   5 5.566 0.5935 10.861, 41.484 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 21.0768 3.0412058993 27.0898045596 15.0637954404
BXD100 m 9.45002 3.0412058993 15.4630245596 3.4370154404
BXD11 m 7.99885 3.4001715622 14.7215934721 1.2761065279
BXD12 m 5.698225 3.4001715622 12.4209684721 -1.0245184721
BXD27 m 6.034075 3.4001715622 12.7568184721 -0.6886684721
BXD32 m 21.79455 3.4001715622 28.5172934721 15.0718065279
BXD34 m 3.133375 3.4001715622 9.8561184721 -3.5893684721
BXD39 m 3.9357 3.0412058993 9.9487045596 -2.0773045596
BXD40 m 3.94206 3.0412058993 9.9550645596 -2.0709445596
BXD43 m 14.281 3.4001715622 21.0037434721 7.5582565279
BXD45 m 13.6462 3.9261799334 21.4089555067 5.8834444933
BXD48 m 26.9594 3.0412058993 32.9724045596 20.9463954404
BXD48a m 11.876975 3.4001715622 18.5997184721 5.1542315279
BXD49 m 24.8522 3.0412058993 30.8652045596 18.8391954404
BXD51 m 16.18716 3.0412058993 22.2001645596 10.1741554404
BXD53 m 4.14748 3.0412058993 10.1604845596 -1.8655245596
BXD55 m 33.3256 3.0412058993 39.3386045596 27.3125954404
BXD6 m 6.01662 3.0412058993 12.0296245596 0.0036154404
BXD62 m 9.12472 3.0412058993 15.1377245596 3.1117154404
BXD63 m 54.0832 3.0412058993 60.0962045596 48.0701954404
BXD64 m 4.18806 3.0412058993 10.2010645596 -1.8249445596
BXD66 m 10.7411 3.0412058993 16.7541045596 4.7280954404
BXD67 m 5.4078 3.4001715622 12.1305434721 -1.3149434721
BXD69 m 32.938 3.0412058993 38.9510045596 26.9249954404
BXD73 m 24.1384 3.0412058993 30.1514045596 18.1253954404
BXD75 m 39.7288 3.0412058993 45.7418045596 33.7157954404
BXD77 m 12.83066 3.0412058993 18.8436645596 6.8176554404
BXD79 m 26.5418 3.0412058993 32.5548045596 20.5287954404
BXD8 m 5.54516 3.0412058993 11.5581645596 -0.4678445596
BXD81 m 21.828932 3.0412058993 27.8419365596 15.8159274404
BXD84 m 28.5658 3.0412058993 34.5788045596 22.5527954404
BXD87 m 25.5374 3.0412058993 31.5504045596 19.5243954404
BXD89 m 20.0086 3.0412058993 26.0216045596 13.9955954404
BXD90 m 17.7357 3.0412058993 23.7487045596 11.7226954404
C57BL/6J m 27.6964 2.1504573144 31.9482362994 23.4445637006
DBA/2J m 20.9694 3.0412058993 26.9824045596 14.9563954404




  GWAS USING LINEAR MIXED MODELS