Project measure / variable:   Schoonjans1   TCA_plasma_t60_HFD

ID, description, units MPD:112741   TCA_plasma_t60_HFD   plasma bile acid taurocholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid taurocholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means396.0   ng/mL
Median of the strain means337.6   ng/mL
SD of the strain means± 289.0
Coefficient of variation (CV)0.7298
Min–max range of strain means98.71   –   1576.0   ng/mL
Mean sample size per strain4.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 9259375.8902 264553.5969 2.3131 0.0004
Residuals 121 13839190.2856 114373.4734


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 148.6 62.28   5 27.851 0.419 97.57, 222.5 -0.86
BXD100 m 265.1 193.8   9 64.6 0.7311 29.968, 618.8 -0.45
BXD11 m 157.1 58.77   3 33.928 0.3741 120.8, 224.9 -0.83
BXD12 m 379.7 524.8   4 262.4 1.382 44.958, 1163.0 -0.06
BXD27 m 548.0 237.5   5 106.2 0.4333 311.9, 806.9 0.53
BXD32 m 255.1 84.19   4 42.094 0.33 182.4, 376.2 -0.49
BXD34 m 378.9 370.1   4 185.0 0.9768 104.9, 925.3 -0.06
BXD39 m 410.2 387.6   3 223.8 0.9449 142.6, 854.7 0.05
BXD40 m 384.4 113.4   4 56.68 0.2949 250.7, 482.1 -0.04
BXD43 m 263.7 99.52   5 44.507 0.3773 137.3, 371.6 -0.46
BXD45 m 173.4 75.75   5 33.878 0.4369 64.05, 267.8 -0.77
BXD48 m 639.2 475.4   5 212.6 0.7437 169.6, 1360.0 0.84
BXD48a m 906.5 659.5   4 329.7 0.7275 289.6, 1629.0 1.77
BXD49 m 343.0 244.7   5 109.5 0.7135 210.7, 779.4 -0.18
BXD51 m 584.1 279.1   3 161.2 0.4779 409.0, 906.0 0.65
BXD53 m 473.4 563.3   5 251.9 1.19 69.8, 1282.0 0.27
BXD55 m 149.1 35.96   5 16.082 0.2412 91.77, 187.8 -0.85
BXD6 m 366.5 318.7   5 142.5 0.8695 95.89, 873.0 -0.1
BXD62 m 250.4 54.07   4 27.036 0.2159 172.6, 292.4 -0.5
BXD63 m 223.0 104.2   5 46.581 0.4671 105.9, 330.3 -0.6
BXD64 m 310.4 165.7   5 74.11 0.5338 172.7, 587.2 -0.3
BXD66 m 192.3 170.1   3 98.21 0.8846 87.83, 388.6 -0.7
BXD67 m 131.8 26.277   5 11.751 0.1994 106.3, 173.0 -0.91
BXD69 m 927.5 684.8   4 342.4 0.7383 111.0, 1557.0 1.84
BXD73 m 332.1 179.3   3 103.5 0.5401 155.0, 513.6 -0.22
BXD75 m 633.1 697.7   4 348.8 1.102 152.3, 1633.0 0.82
BXD77 m 417.0 350.6   5 156.8 0.8409 149.0, 984.0 0.07
BXD79 m 495.5 494.1   5 221.0 0.9971 72.68, 1212.0 0.34
BXD8 m 165.4 167.1   3 96.48 1.01 68.01, 358.4 -0.8
BXD81 m 689.0 472.9   5 211.5 0.6864 119.6, 1334.0 1.01
BXD84 m 357.4 324.2   5 145.0 0.907 120.4, 914.8 -0.13
BXD87 m 248.3 94.41   4 47.203 0.3802 190.4, 388.0 -0.51
BXD89 m 98.71 34.766   5 15.548 0.3522 49.78, 137.4 -1.03
BXD90 m 221.1 144.9   4 72.43 0.6553 75.91, 421.7 -0.61
C57BL/6J m 1576.0 1098.0   2   776.0 0.6964 799.9, 2352.0 4.08
DBA/2J m 162.0 164.2   3 94.83 1.0138 39.264, 348.6 -0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 148.636 151.2438252851 448.0630446022 -150.7910446022
BXD100 m 265.092 112.7304915049 488.2717420108 41.9122579892
BXD11 m 157.1 195.2549388487 543.6586523828 -229.4586523828
BXD12 m 379.7395 169.0957372573 714.5091130162 44.9698869838
BXD27 m 548.0 151.2438252851 847.4270446022 248.5729553978
BXD32 m 255.1 169.0957372573 589.8696130162 -79.6696130162
BXD34 m 378.85 169.0957372573 713.6196130162 44.0803869838
BXD39 m 410.2 195.2549388487 796.7586523828 23.6413476172
BXD40 m 384.4 169.0957372573 719.1696130162 49.6303869838
BXD43 m 263.74 151.2438252851 563.1670446022 -35.6870446022
BXD45 m 173.41 151.2438252851 472.8370446022 -126.0170446022
BXD48 m 639.24 151.2438252851 938.6670446022 339.8129553978
BXD48a m 906.5 169.0957372573 1241.2696130162 571.7303869838
BXD49 m 343.0 151.2438252851 642.4270446022 43.5729553978
BXD51 m 584.1 195.2549388487 970.6586523828 197.5413476172
BXD53 m 473.392 151.2438252851 772.8190446022 173.9649553978
BXD55 m 149.074 151.2438252851 448.5010446022 -150.3530446022
BXD6 m 366.518 151.2438252851 665.9450446022 67.0909553978
BXD62 m 250.425 169.0957372573 585.1946130162 -84.3446130162
BXD63 m 223.0 151.2438252851 522.4270446022 -76.4270446022
BXD64 m 310.4 151.2438252851 609.8270446022 10.9729553978
BXD66 m 192.31 195.2549388487 578.8686523828 -194.2486523828
BXD67 m 131.8 151.2438252851 431.2270446022 -167.6270446022
BXD69 m 927.5 169.0957372573 1262.2696130162 592.7303869838
BXD73 m 332.0666666667 195.2549388487 718.6253190495 -54.4919857162
BXD75 m 633.1 169.0957372573 967.8696130162 298.3303869838
BXD77 m 416.96 151.2438252851 716.3870446022 117.5329553978
BXD79 m 495.482 151.2438252851 794.9090446022 196.0549553978
BXD8 m 165.4466666667 195.2549388487 552.0053190495 -221.1119857162
BXD81 m 689.0 151.2438252851 988.4270446022 389.5729553978
BXD84 m 357.4 151.2438252851 656.8270446022 57.9729553978
BXD87 m 248.275 169.0957372573 583.0446130162 -86.4946130162
BXD89 m 98.708 151.2438252851 398.1350446022 -200.7190446022
BXD90 m 221.0525 169.0957372573 555.8221130162 -113.7171130162
C57BL/6J m 1575.95 239.1374849688 2049.3857269979 1102.5142730021
DBA/2J m 162.018 195.2549388487 548.5766523828 -224.5406523828




  GWAS USING LINEAR MIXED MODELS