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Project measure / variable:   Auwerx1   mip1_alpha_HFD

ID, description, units MPD:111387   mip1_alpha_HFD   blood macrophage inflammatory protein 1 alpha subunit (MIP1 alpha) amount   [pg/mL]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   32 strains     sex: m     age: 29wks
Procedure cell signaling molecule detection
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood macrophage inflammatory protein 1 alpha subunit (MIP1 alpha) amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested32 strains
Mean of the strain means12.712   pg/mL
Median of the strain means11.964   pg/mL
SD of the strain means± 4.6863
Coefficient of variation (CV)0.3687
Min–max range of strain means7.5367   –   29.398   pg/mL
Mean sample size per strain3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 31 2608.8803 84.1574 1.0384 0.4301
Residuals 91 7375.4679 81.0491


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100 m 9.0875 2.175   4 1.0875 0.2393 8.0, 12.35 -0.77
BXD43 m 12.623 5.3411   3 3.0837 0.4231 8.0, 18.47 -0.02
BXD44 m 8.12 0.16971   2   0.12 0.0209 8.0, 8.24 -0.98
BXD45 m 16.377 8.9991   4 4.4995 0.5495 8.0, 28.85 0.78
BXD48 m 9.082 2.0167   5 0.90191 0.2221 8.0, 12.64 -0.77
BXD48a m 8.58 0.82024   2   0.58 0.0956 8.0, 9.16 -0.88
BXD51 m 8.3 0.6   4 0.3 0.0723 8.0, 9.2 -0.94
BXD55 m 12.918 4.4451   4 2.2225 0.3441 8.0, 18.1 0.04
BXD56 m 12.94 2.1779   2   1.54 0.1683 11.4, 14.48 0.05
BXD61 m 19.09 5.7036   5 2.5507 0.2988 13.23, 26.82 1.36
BXD62 m 18.58 20.578   4 10.289 1.1075 8.0, 49.44 1.25
BXD65 m 8.0 0.0   4 0.0 0.0 8.0, 8.0 -1.01
BXD66 m 8.3225 0.48733   4 0.24367 0.0586 8.0, 9.03 -0.94
BXD68 m 17.18 10.265   4 5.1326 0.5975 8.0, 26.57 0.95
BXD69 m 11.373 0.90603   4 0.45302 0.0797 10.28, 12.4 -0.29
BXD70 m 8.7633 1.3135   3 0.75834 0.1499 8.0, 10.28 -0.84
BXD71 m 7.5367 0.80252   3 0.46333 0.1065 6.61, 8.0 -1.1
BXD73 m 13.56 4.4724   4 2.2362 0.3298 8.0, 17.54 0.18
BXD73a m 14.648 0.31878   5 0.14256 0.0218 14.28, 15.05 0.41
BXD73b m 10.252 1.6263   5 0.72729 0.1586 8.0, 12.06 -0.52
BXD75 m 9.374 1.3847   5 0.61925 0.1477 8.0, 10.92 -0.71
BXD81 m 10.75 4.7631   3 2.75 0.4431 8.0, 16.25 -0.42
BXD83 m 8.2133 0.27227   3 0.1572 0.0332 8.0, 8.52 -0.96
BXD84 m 19.28 19.538   3 11.28 1.0134 8.0, 41.84 1.4
BXD85 m 10.713 2.4435   3 1.4107 0.2281 8.0, 12.74 -0.43
BXD87 m 16.275 1.7127   4 0.85633 0.1052 14.74, 18.55 0.76
BXD89 m 29.398 34.954   4 17.477 1.189 8.0, 81.53 3.56
BXD90 m 12.555 3.625   4 1.8125 0.2887 8.0, 16.3 -0.03
BXD98 m 14.264 11.55   5 5.1655 0.8098 8.0, 34.6 0.33
BXD99 m 10.796 4.0391   5 1.8063 0.3741 8.0, 17.72 -0.41
C57BL/6J m 13.732 2.4915   5 1.1142 0.1814 10.65, 17.41 0.22
DBA/2J m 16.1 2.4391   4 1.2195 0.1515 13.53, 19.37 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 9.0875 4.50136361 18.0289058387 0.1460941613
BXD43 m 12.6233333333 5.197726984 22.9479794692 2.2986871975
BXD44 m 8.12 6.3658894665 20.7650574038 -4.5250574038
BXD45 m 16.3775 4.50136361 25.3189058387 7.4360941613
BXD48 m 9.082 4.0261420094 17.0794365079 1.0845634921
BXD48a m 8.58 6.3658894665 21.2250574038 -4.0650574038
BXD51 m 8.3 4.50136361 17.2414058387 -0.6414058387
BXD55 m 12.9175 4.50136361 21.8589058387 3.9760941613
BXD56 m 12.94 6.3658894665 25.5850574038 0.2949425962
BXD61 m 19.09 4.0261420094 27.0874365079 11.0925634921
BXD62 m 18.58 4.50136361 27.5214058387 9.6385941613
BXD65 m 8.0 4.50136361 16.9414058387 -0.9414058387
BXD66 m 8.3225 4.50136361 17.2639058387 -0.6189058387
BXD68 m 17.18 4.50136361 26.1214058387 8.2385941613
BXD69 m 11.3725 4.50136361 20.3139058387 2.4310941613
BXD70 m 8.7633333333 5.197726984 19.0879794692 -1.5613128025
BXD71 m 7.5366666667 5.197726984 17.8613128025 -2.7879794692
BXD73 m 13.56 4.50136361 22.5014058387 4.6185941613
BXD73a m 14.648 4.0261420094 22.6454365079 6.6505634921
BXD73b m 10.252 4.0261420094 18.2494365079 2.2545634921
BXD75 m 9.374 4.0261420094 17.3714365079 1.3765634921
BXD81 m 10.75 5.197726984 21.0746461358 0.4253538642
BXD83 m 8.2133333333 5.197726984 18.5379794692 -2.1113128025
BXD84 m 19.28 5.197726984 29.6046461358 8.9553538642
BXD85 m 10.7133333333 5.197726984 21.0379794692 0.3886871975
BXD87 m 16.275 4.50136361 25.2164058387 7.3335941613
BXD89 m 29.3975 4.50136361 38.3389058387 20.4560941613
BXD90 m 12.555 4.50136361 21.4964058387 3.6135941613
BXD98 m 14.264 4.0261420094 22.2614365079 6.2665634921
BXD99 m 10.796 4.0261420094 18.7934365079 2.7985634921
C57BL/6J m 13.732 4.0261420094 21.7294365079 5.7345634921
DBA/2J m 16.1 4.50136361 25.0414058387 7.1585941613




  GWAS USING LINEAR MIXED MODELS