Project measure / variable:   Auwerx1   inf_gamma_HFD

ID, description, units MPD:111375   inf_gamma_HFD   blood interferon gamma (INF gamma) amount   [pg/mL]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   32 strains     sex: m     age: 29wks
Procedure cell signaling molecule detection
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood interferon gamma (INF gamma) amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested32 strains
Mean of the strain means13.378   pg/mL
Median of the strain means12.296   pg/mL
SD of the strain means± 5.0794
Coefficient of variation (CV)0.3797
Min–max range of strain means7.294   –   32.06   pg/mL
Mean sample size per strain3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 31 3281.247 105.8467 1.3463 0.1404
Residuals 91 7154.202 78.6176


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100 m 14.222 3.1596   4 1.5798 0.2222 11.62, 18.63 0.17
BXD43 m 11.057 2.5939   3 1.4976 0.2346 9.47, 14.05 -0.46
BXD44 m 8.74 2.1779   2   1.54 0.2492 7.2, 10.28 -0.91
BXD45 m 8.995 1.4396   4 0.71982 0.16 7.16, 10.68 -0.86
BXD48 m 14.29 1.5143   5 0.6772 0.106 11.95, 15.75 0.18
BXD48a m 16.315 3.2739   2   2.315 0.2007 14.0, 18.63 0.58
BXD51 m 8.6975 1.3091   4 0.65457 0.1505 7.16, 10.27 -0.92
BXD55 m 12.043 9.5811   4 4.7906 0.7956 5.6, 25.88 -0.26
BXD56 m 13.0 2.093   2   1.48 0.161 11.52, 14.48 -0.07
BXD61 m 9.866 6.946   5 3.1064 0.704 5.6, 21.58 -0.69
BXD62 m 11.11 5.8069   4 2.9034 0.5227 5.6, 16.48 -0.45
BXD65 m 13.93 5.5634   4 2.7817 0.3994 5.6, 17.18 0.11
BXD66 m 15.42 2.1089   4 1.0545 0.1368 12.97, 17.18 0.4
BXD68 m 8.845 2.3626   4 1.1813 0.2671 5.73, 10.68 -0.89
BXD69 m 13.87 2.7601   4 1.3801 0.199 11.5, 16.68 0.1
BXD70 m 9.7433 1.006   3 0.58081 0.1032 8.68, 10.68 -0.72
BXD71 m 10.56 4.4212   3 2.5526 0.4187 6.08, 14.92 -0.55
BXD73 m 12.548 4.1156   4 2.0578 0.328 9.07, 17.13 -0.16
BXD73a m 19.456 5.6571   5 2.5299 0.2908 14.0, 26.48 1.2
BXD73b m 20.714 7.6151   5 3.4056 0.3676 11.5, 32.52 1.44
BXD75 m 8.08 1.8013   5 0.80557 0.2229 5.6, 9.87 -1.04
BXD81 m 9.2333 1.9722   3 1.1386 0.2136 7.91, 11.5 -0.82
BXD83 m 14.84 2.2461   3 1.2968 0.1514 12.28, 16.48 0.29
BXD84 m 11.867 3.772   3 2.1777 0.3179 8.28, 15.8 -0.3
BXD85 m 11.027 3.2857   3 1.897 0.298 7.53, 14.05 -0.46
BXD87 m 15.175 2.866   4 1.433 0.1889 11.62, 18.63 0.35
BXD89 m 32.06 42.609   4 21.305 1.329 6.08, 95.74 3.68
BXD90 m 21.595 6.2259   4 3.1129 0.2883 12.97, 26.86 1.62
BXD98 m 8.888 2.5376   5 1.1349 0.2855 5.6, 12.36 -0.88
BXD99 m 7.294 1.6019   5 0.71641 0.2196 5.6, 9.07 -1.2
C57BL/6J m 16.476 6.187   5 2.7669 0.3755 10.3, 25.72 0.61
DBA/2J m 18.133 3.8998   4 1.9499 0.2151 13.65, 23.07 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 14.2225 4.4333284566 23.0287623642 5.4162376358
BXD43 m 11.0566666667 5.1191667557 21.2252625598 0.8880707736
BXD44 m 8.74 6.2696732298 21.1939356693 -3.7139356693
BXD45 m 8.995 4.4333284566 17.8012623642 0.1887376358
BXD48 m 14.29 3.9652895182 22.1665605097 6.4134394903
BXD48a m 16.315 6.2696732298 28.7689356693 3.8610643307
BXD51 m 8.6975 4.4333284566 17.5037623642 -0.1087623642
BXD55 m 12.0425 4.4333284566 20.8487623642 3.2362376358
BXD56 m 13.0 6.2696732298 25.4539356693 0.5460643307
BXD61 m 9.866 3.9652895182 17.7425605097 1.9894394903
BXD62 m 11.11 4.4333284566 19.9162623642 2.3037376358
BXD65 m 13.93 4.4333284566 22.7362623642 5.1237376358
BXD66 m 15.42 4.4333284566 24.2262623642 6.6137376358
BXD68 m 8.845 4.4333284566 17.6512623642 0.0387376358
BXD69 m 13.87 4.4333284566 22.6762623642 5.0637376358
BXD70 m 9.7433333333 5.1191667557 19.9119292264 -0.4252625598
BXD71 m 10.56 5.1191667557 20.7285958931 0.3914041069
BXD73 m 12.5475 4.4333284566 21.3537623642 3.7412376358
BXD73a m 19.456 3.9652895182 27.3325605097 11.5794394903
BXD73b m 20.714 3.9652895182 28.5905605097 12.8374394903
BXD75 m 8.08 3.9652895182 15.9565605097 0.2034394903
BXD81 m 9.2333333333 5.1191667557 19.4019292264 -0.9352625598
BXD83 m 14.84 5.1191667557 25.0085958931 4.6714041069
BXD84 m 11.8666666667 5.1191667557 22.0352625598 1.6980707736
BXD85 m 11.0266666667 5.1191667557 21.1952625598 0.8580707736
BXD87 m 15.175 4.4333284566 23.9812623642 6.3687376358
BXD89 m 32.06 4.4333284566 40.8662623642 23.2537376358
BXD90 m 21.595 4.4333284566 30.4012623642 12.7887376358
BXD98 m 8.888 3.9652895182 16.7645605097 1.0114394903
BXD99 m 7.294 3.9652895182 15.1705605097 -0.5825605097
C57BL/6J m 16.476 3.9652895182 24.3525605097 8.5994394903
DBA/2J m 18.1325 4.4333284566 26.9387623642 9.3262376358




  GWAS USING LINEAR MIXED MODELS