Project measure / variable:   Shorter5   sperm_adj

ID, description, units MPD:110130   sperm_adj   sperm count per mg testis weight (x 103)   [n/mg]  
Data set, strains Shorter5   CC RIX   28 strains     sex: m     age: 7-44wks
Procedure sperm count
Ontology mappings

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  STRAIN COMPARISON PLOT
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Shorter5 - sperm count per mg testis weight (x 103)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means158.3   n/mg
Median of the strain means151.8   n/mg
SD of the strain means± 30.953
Coefficient of variation (CV)0.1955
Min–max range of strain means103.8   –   249.5   n/mg
Mean sample size per strain3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 23 92193.1802 4008.3991 3.0602 0.0001
Residuals 82 107408.1482 1309.8555


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(001 x 002) m 120.3 17.112   2   12.1 0.1422 108.2, 132.4 -1.23
RIX:CC(001 x 011) m 181.0 26.65   3 15.387 0.1472 154.3, 207.6 0.73
RIX:CC(001 x 018) m 127.3 46.887   7 17.722 0.3683 74.49, 194.9 -1.0
RIX:CC(002 x 010) m 130.5 4.5078   3 2.6026 0.0345 125.3, 133.3 -0.9
RIX:CC(002 x 011) m 138.4 27.2   7 10.281 0.1966 107.6, 180.4 -0.64
RIX:CC(003 x 018) m 249.5 29.407   4 14.704 0.1179 216.3, 283.8 2.95
RIX:CC(008 x 013) m 148.8 33.053   8 11.686 0.2222 84.62, 182.3 -0.31
RIX:CC(008 x 021) m 152.2 38.573   7 14.579 0.2535 95.74, 216.9 -0.2
RIX:CC(008 x 065) m 172.3 23.7   3 13.683 0.1376 154.6, 199.2 0.45
RIX:CC(010 x 001) m 177.9 0.0   1   0.0 0.0 177.9, 177.9 0.63
RIX:CC(010 x 002) m 155.7 0.0   1   0.0 0.0 155.7, 155.7 -0.08
RIX:CC(010 x 011) m 179.7 49.817   7 18.829 0.2772 114.2, 249.4 0.69
RIX:CC(011 x 003) m 125.9 36.084   5 16.137 0.2867 67.11, 153.8 -1.05
RIX:CC(011 x 018) m 197.3 0.0   1   0.0 0.0 197.3, 197.3 1.26
RIX:CC(013 x 053) m 136.6 0.0   1   0.0 0.0 136.6, 136.6 -0.7
RIX:CC(018 x 002) m 145.3 46.542   4 23.271 0.3203 93.22, 203.2 -0.42
RIX:CC(018 x 003) m 183.8 30.558   3 17.643 0.1662 151.9, 212.8 0.82
RIX:CC(018 x 010) m 175.1 20.456   6 8.351 0.1168 154.2, 211.8 0.54
RIX:CC(021 x 065) m 196.2 19.153   4 9.5764 0.0976 180.3, 222.2 1.22
RIX:CC(034 x 008) m 143.7 54.59   2   38.6 0.3799 105.1, 182.3 -0.47
RIX:CC(034 x 021) m 141.4 40.936   4 20.468 0.2895 90.78, 190.9 -0.55
RIX:CC(034 x 053) m 126.4 22.854   5 10.22 0.1807 100.4, 151.0 -1.03
RIX:CC(053 x 021) m 142.6 51.64   5 23.096 0.3621 64.89, 208.7 -0.51
RIX:CC(053 x 034) m 103.8 29.737   3 17.169 0.2865 85.38, 138.1 -1.76
RIX:CC(065 x 008) m 192.0 35.46   4 17.73 0.1847 148.5, 234.6 1.09
RIX:CC(065 x 013) m 152.2 38.579   4 19.29 0.2535 100.0, 183.6 -0.2
RIX:CC(065 x 034) m 151.4 34.914   4 17.457 0.2306 106.3, 181.4 -0.22
RIX:CC(065 x 053) m 185.8 40.588   2   28.7 0.2184 157.1, 214.5 0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(001 x 002) m 120.3 25.591555888 171.2097570341 69.390242966
RIX:CC(001 x 011) m 181.0333333333 20.8954178832 222.6009758875 139.4656907792
RIX:CC(001 x 018) m 127.3128571429 13.6792620182 154.5252669236 100.1004473621
RIX:CC(002 x 010) m 130.5 20.8954178832 172.0676425542 88.9323574458
RIX:CC(002 x 011) m 138.3714285714 13.6792620182 165.5838383522 111.1590187907
RIX:CC(003 x 018) m 249.5 18.0959627095 285.4986344273 213.5013655727
RIX:CC(008 x 013) m 148.765 12.795777944 174.219878517 123.310121483
RIX:CC(008 x 021) m 152.1914285714 13.6792620182 179.4038383522 124.9790187907
RIX:CC(008 x 065) m 172.2666666667 20.8954178832 213.8343092208 130.6990241125
RIX:CC(010 x 011) m 179.7 13.6792620182 206.9124097808 152.4875902192
RIX:CC(011 x 003) m 125.862 16.1855210947 158.0601574707 93.6638425293
RIX:CC(018 x 002) m 145.33 18.0959627095 181.3286344273 109.3313655727
RIX:CC(018 x 003) m 183.8333333333 20.8954178832 225.4009758875 142.2656907792
RIX:CC(018 x 010) m 175.0666666667 14.7752916809 204.4594285947 145.6739047387
RIX:CC(021 x 065) m 196.225 18.0959627095 232.2236344273 160.2263655727
RIX:CC(034 x 008) m 143.7 25.591555888 194.6097570341 92.7902429659
RIX:CC(034 x 021) m 141.395 18.0959627095 177.3936344273 105.3963655727
RIX:CC(034 x 053) m 126.44 16.1855210947 158.6381574707 94.2418425293
RIX:CC(053 x 021) m 142.638 16.1855210947 174.8361574707 110.4398425293
RIX:CC(053 x 034) m 103.7933333333 20.8954178832 145.3609758875 62.2256907792
RIX:CC(065 x 008) m 191.975 18.0959627095 227.9736344273 155.9763655727
RIX:CC(065 x 013) m 152.2 18.0959627095 188.1986344273 116.2013655727
RIX:CC(065 x 034) m 151.4 18.0959627095 187.3986344273 115.4013655727
RIX:CC(065 x 053) m 185.8 25.591555888 236.7097570341 134.8902429659




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA