UNC-MMUGA2: SNPs for 69 Collaborative Cross strains plus 8 founder strains, 76,000+ locations (2017)

Srivastava A, Morgan AP, Najarian ML, Sarsani VK, Sigmon JS, Shorter JR, Kashfeen A, McMullan RC, Williams LH, Giusti-Rodríguez P, Ferris MT, Sullivan P, Hock P, Miller DR, Bell TA, McMillan L, Churchill GA, de Villena FP. Genomes of the Mouse Collaborative Cross. Genetics. 2017 Jun;206(2):537-556. doi: 10.1534/genetics.116.198838.   PubMed 28592495  


       
The CC calls were downloaded on Feb 1 2017 via the "2017 CC Genome Paper" link at bottom of this page . We merged the founder strain calls from Sanger4. Additional information on the UNC CC strains can be seen here: http://csbio.unc.edu/CCstatus/index.py?run=availableLines

UNC-MMUGA2 downloads
Do the following: Click Retrieve SNP Data above, submit a query, then save your results as CSV.
Institutional authorship UNC Systems Genetics     Lab web site
Investigators Fernando Pardo-Manuel de Villena       University of North Carolina,  Chapel Hill, NC
ContactFernando Pardo-Manuel de Villena     fernando@med.unc.edu     Lab web site
Affiliated CenterCenter for Genome Dynamics (CGD)
Project type SNP/variation strain survey data set
MPD identifiersUNC-MMUGA2     MPD:594
Data changelog No updates/corrections.       Initial release date: 06/2017.
Formatted citation
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• SNP profiling, 76,000+ genomic locations, 1-19,X,MT
• 77 strains tested
• Panel: CC w/par