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Project measure / variable:   Brown1   groom_EPM

ID, description, units MPD:9425   groom_EPM   grooming duration   [s]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Brown1 - grooming duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means6.14   s 3.52   s
Median of the strain means5.21   s 3.25   s
SD of the strain means± 7.79 ± 3.21
Coefficient of variation (CV)1.27 0.911
Min–max range of strain means0.0375   –   30.6   s 0.202   –   9.29   s
Mean sample size per strain12.5   mice 13.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 325.5157 325.5157 3.019 0.0832
strain 12 9033.536 752.7947 6.9817 < 0.0001
sex:strain 12 2804.6172 233.7181 2.1676 0.013
Residuals 323 34826.9211 107.8233


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.99 13.0   12 3.76 2.61 -0.15
129S1/SvImJ m 8.39 22.1   12 6.38 2.63 1.52
A/J f 0.594 1.08   12 0.313 1.82 -0.71
A/J m 0.581 1.29   19 0.296 2.22 -0.92
AKR/J f 7.07 5.0   12 1.44 0.707 1.38, 18.0 0.12
AKR/J m 3.53 3.26   19 0.747 0.923 0.0
BALB/cByJ f 0.0375 0.102   22 0.0217 2.72 -0.78
BALB/cByJ m 0.202 0.393   12 0.113 1.94 -1.04
BALB/cJ f 2.78 5.28   14 1.41 1.9 -0.43
BALB/cJ m 0.682 1.37   12 0.397 2.02 -0.89
C3H/HeJ f 0.191 0.721   19 0.165 3.77 -0.76
C3H/HeJ m 0.579 2.06   18 0.486 3.56 -0.92
C57BL/6J f 6.35 10.6   12 3.05 1.67 0.03
C57BL/6J m 4.78 4.57   13 1.27 0.956 0.39
CAST/EiJ f 5.43 9.51   11 2.87 1.75 -0.09
CAST/EiJ m 4.13 6.67   12 1.93 1.62 0.19
DBA/2J f 30.6 39.3   13 10.9 1.28 2.0, 132.0 3.14
DBA/2J m 9.29 17.4   13 4.82 1.87 1.8
FVB/NJ f 1.85 1.94   12 0.561 1.05 -0.55
FVB/NJ m 2.29 2.27   12 0.656 0.993 -0.38
MOLF/EiJ f 1.1 3.23   11 0.973 2.94 -0.65
MOLF/EiJ m 0.445 1.17   11 0.353 2.63 -0.96
SJL/J f 6.11 8.48   13 2.35 1.39 0.0
SJL/J m 3.25 2.97   12 0.858 0.914 -0.09
SM/J f 7.62 4.79   9 1.6 0.63 1.25, 14.4 0.19
SM/J m 7.67 4.73   12 1.37 0.617 2.53, 18.3 1.29
SPRET/EiJ f 11.3 0.0   1   0.0 0.0 11.3, 11.3 0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.99 2.9975 10.8872 0.0
129S1/SvImJ m 8.3858 2.9975 14.283 2.4887
A/J f 0.5941 2.9975 6.4913 0.0
A/J m 0.5812 2.3822 5.2678 0.0
AKR/J f 7.065 2.9975 12.9622 1.1678
AKR/J m 3.5279 2.3822 8.2145 0.0
BALB/cByJ f 0.0375 2.2138 4.3928 0.0
BALB/cByJ m 0.2021 2.9975 6.0993 0.0
BALB/cJ f 2.7771 2.7752 8.2369 0.0
BALB/cJ m 0.6817 2.9975 6.5788 0.0
C3H/HeJ f 0.1911 2.3822 4.8777 0.0
C3H/HeJ m 0.5794 2.4475 5.3945 0.0
C57BL/6J f 6.3534 2.9975 12.2506 0.4562
C57BL/6J m 4.7798 2.8799 10.4456 0.0
CAST/EiJ f 5.4282 3.1308 11.5876 0.0
CAST/EiJ m 4.1264 2.9975 10.0236 0.0
DBA/2J f 30.5931 2.8799 36.2589 24.9273
DBA/2J m 9.2892 2.8799 14.9551 3.6234
FVB/NJ f 1.8492 2.9975 7.7463 0.0
FVB/NJ m 2.2875 2.9975 8.1847 0.0
MOLF/EiJ f 1.0975 3.1308 7.2569 0.0
MOLF/EiJ m 0.4455 3.1308 6.6049 0.0
SJL/J f 6.1054 2.8799 11.7712 0.4396
SJL/J m 3.2508 2.9975 9.148 0.0
SM/J f 7.6156 3.4613 14.425 0.8061
SM/J m 7.6675 2.9975 13.5647 1.7703


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.6879 2.1196 10.8578 2.518
A/J both 0.5876 1.9144 4.3539 0.0
AKR/J both 5.2964 1.9144 9.0628 1.5301
BALB/cByJ both 0.1198 1.8632 3.7853 0.0
BALB/cJ both 1.7294 2.0425 5.7477 0.0
C3H/HeJ both 0.3852 1.7077 3.7449 0.0
C57BL/6J both 5.5666 2.0784 9.6555 1.4776
CAST/EiJ both 4.7773 2.1672 9.041 0.5136
DBA/2J both 19.9412 2.0364 23.9475 15.9348
FVB/NJ both 2.0683 2.1196 6.2383 0.0
MOLF/EiJ both 0.7715 2.2138 5.1269 0.0
SJL/J both 4.6781 2.0784 8.7671 0.5892
SM/J both 7.6415 2.2894 12.1456 3.1375




  GWAS USING LINEAR MIXED MODELS